suba logo
AT4G26630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEK domain-containing chromatin associated protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEK domain-containing chromatin associated protein; CONTAINS InterPro DOMAIN/s: DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: DEK domain-containing chromatin associated protein (TAIR:AT5G55660.1); Has 293195 Blast hits to 121176 proteins in 3836 species: Archae - 1379; Bacteria - 45347; Metazoa - 110567; Fungi - 36004; Plants - 15140; Viruses - 1802; Other Eukaryotes - 82956 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTJAeggNOG:KOG2266EMBL:AL078465EMBL:AL161565EMBL:CP002687EnsemblPlants:AT4G26630EnsemblPlants:AT4G26630.1
EnsemblPlants:AT4G26630.2entrez:828770Gene3D:1.10.10.60GeneID:828770GO:GO:0003677GO:GO:0003682GO:GO:0005634
GO:GO:0005829GO:GO:0006338GO:GO:0009651GO:GO:0045892Gramene:AT4G26630.1Gramene:AT4G26630.2hmmpanther:PTHR13468
hmmpanther:PTHR13468:SF1HOGENOM:HOG000240218InterPro:IPR009057InterPro:IPR014876KEGG:ath:AT4G26630ncoils:CoilOMA:HKKAGKE
Pfam:PF08766PIR:T08929Proteomes:UP000006548RefSeq:NP_001031724.1RefSeq:NP_194393.3STRING:3702.AT4G26630.1SUPFAM:0042580
TAIR:AT4G26630UniGene:At.43273UniProt:Q9SUA1
Coordinates (TAIR10) chr4:-:13430873..13434877
Molecular Weight (calculated) 85253.50 Da
IEP (calculated) 4.72
GRAVY (calculated) -1.53
Length 763 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEDTKATIE PTANKTTSLE KPSEAMAGKE NAGGKETQEL AKDEDMAEPD NMEIDAQIKK DDEKAETEDK ESEVKKNEDN AETQKMEEKV EVTKDEGQAE
101: ATNMDEDADG KKEQTDDGVS VEDTVMKENV ESKDNNYAKD DEKETKETDI TEADHKKAGK EDIQHEADKA NGTKDGNTGD IKEEGTLVDE DKGTDMDEKV
201: ENGDENKQVE NVEGKEKEDK EENKTKEVEA AKAEVDESKV EDEKEGSEDE NDNEKVESKD AKEDEKEETN DDKEDEKEES KGSKKRGKGT SSGGKVREKN
301: KTEEVKKDAE PRTPFSDRPV RERKSVERLV ALIDKDSSKE FRVEKGRGAY LKDIPNVANK VMRKRSDETL KLLHPILFGG RRGKAAQIKT NILGFSGFVW
401: HGDEKKAKEK VKEKLEKCTK EKLWEFCDVL DIHITKATTK KEDIITKLFE FLEKPHVTGD VTGDTTVSEK EKSSKGAKRK RTPKKTSPTA GSSSSKRSAK
501: SQKKSEEATK VVKKSLAHSD DESEEEKEEE EKQEEEKAEE KEEKKEEENE NGIPDKSEDE APQPSESEEK DESEEHSEEE TTKKKRGSRL SAGKKESAGR
601: ARNKKAVVAA KSSPPEKITQ KRSSAKRKKT DDDSDTSPKA SSKRKKSENP IKASPAPSKS ASKEKPVKRA GKGKDKPSDK VLKNAIVEIL KRVDFSTATF
701: TDILKELAKE FTEDLTPRKS SIKMIIQEEL TKLADEEEEE EKKEEDSEKE EAGGSGGGEE VKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)