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AT1G58380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S5 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
XW6; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: guard cell, pollen tube, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, eukaryotic/archaeal (InterPro:IPR005711), Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G59359.1); Has 10515 Blast hits to 9714 proteins in 2923 species: Archae - 262; Bacteria - 5279; Metazoa - 1538; Fungi - 549; Plants - 325; Viruses - 26; Other Eukaryotes - 2536 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0098eggNOG:KOG0877EMBL:JN389445EnsemblPlants:AT1G58380
EnsemblPlants:AT1G58380.1entrez:842207ExpressionAtlas:G1JSI6Gene3D:3.30.160.20
Gene3D:3.30.230.10GeneID:842207GO:GO:0003723GO:GO:0003735
GO:GO:0006412GO:GO:0015935Gramene:AT1G58380.1hmmpanther:PTHR13718
hmmpanther:PTHR13718:SF69InterPro:IPR000851InterPro:IPR005324InterPro:IPR005711
InterPro:IPR013810InterPro:IPR014720InterPro:IPR014721InterPro:IPR018192
InterPro:IPR020568KEGG:ath:AT1G58380KO:K02981OMA:HTYGFLT
PANTHER:PTHR13718PaxDb:G1JSI6PaxDb:Q8L8Y0Pfam:PF00333
Pfam:PF03719Pfam:Q8L8Y0Pfscan:PS50881PhylomeDB:G1JSI6
PRIDE:G1JSI6PROSITE:PS00585PROSITE:PS50881ProteinModelPortal:G1JSI6
RefSeq:NP_176134.1scanprosite:PS00585SMR:G1JSI6STRING:3702.AT1G58380.1
SUPFAM:SSF54211SUPFAM:SSF54768tair10-symbols:XW6TIGRfam:TIGR01020
TIGRFAMs:TIGR01020UniGene:At.23094UniGene:At.23348UniGene:At.70116
UniProt:G1JSI6UniProt:Q8L8Y0
Coordinates (TAIR10) chr1:+:21689115..21690085
Molecular Weight (calculated) 30743.20 Da
IEP (calculated) 10.94
GRAVY (calculated) -0.43
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERGGEGGA ERGGDRGDFG RGFGGGRGGG RGRDRGPRGR GRRGGRASEE TKWVPVTKLG RLVADNKITK LEQIYLHSLP VKEYQIIDHL VGPTLKDEVM
101: KIMPVQKQTR AGQRTRFKAF VVVGDGNGHV GLGVKCSKEV ATAIRGAIIL AKLSVVPVRR GYWGNKIGKP HTVPCKVTGK CGSVTVRMVP APRGSGIVAA
201: RVPKKVLQFA GIDDVFTSSR GSTKTLGNFV KATFDCLQKT YGFLTPEFWK ETRFSRSPYQ EHTDFLSTKA VSATKVITEG EDQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)