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AT3G25520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22574745 (2012): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14505352 (2003): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribosomal protein L5
Curator
Summary (TAIR10)
Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
Computational
Description (TAIR10)
ribosomal protein L5 (ATL5); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: in 7 processes; LOCATED IN: in 10 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 B (TAIR:AT5G39740.2); Has 1450 Blast hits to 1449 proteins in 545 species: Archae - 345; Bacteria - 5; Metazoa - 620; Fungi - 157; Plants - 121; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink).
Protein Annotations
BioGrid:7469eggNOG:COG0256eggNOG:KOG0875EMBL:AB025639
EMBL:AY054161EMBL:AY065103EMBL:AY081701EMBL:AY087197
EMBL:AY136319EMBL:AY186611EMBL:BT000411EMBL:BT002427
EMBL:BT008705EMBL:CP002686EnsemblPlants:AT3G25520EnsemblPlants:AT3G25520.1
entrez:822138ExpressionAtlas:Q8LBI1GeneID:822138Genevisible:Q8LBI1
GO:GO:0000027GO:GO:0003735GO:GO:0005634GO:GO:0005730
GO:GO:0005737GO:GO:0005773GO:GO:0005829GO:GO:0005886
GO:GO:0006412GO:GO:0006913GO:GO:0008097GO:GO:0008283
GO:GO:0009507GO:GO:0009735GO:GO:0009955GO:GO:0009965
GO:GO:0010015GO:GO:0016020GO:GO:0022625GO:GO:0022626
HAMAP:MF_01337_Ahmmpanther:PTHR23410HOGENOM:HOG000105947InParanoid:Q8LBI1
IntAct:Q8LBI1InterPro:IPR005485InterPro:IPR025607OMA:NWAAAYC
PANTHER:PTHR23410PaxDb:Q8LBI1Pfam:PF00861Pfam:PF14204
Pfam:PF17144Pfam:Q8LBI1PhylomeDB:Q8LBI1PRIDE:Q8LBI1
PRINTS:PR00058PRO:PR:Q8LBI1ProteinModelPortal:Q8LBI1Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_566767.1SMR:Q8LBI1
STRING:3702.AT3G25520.1SUPFAM:SSF53137TAIR:AT3G25520tair10-symbols:ATL5
tair10-symbols:OLI5tair10-symbols:PGY3tair10-symbols:RPL5AUniGene:At.23809
UniGene:At.25396UniProt:Q8LBI1
Coordinates (TAIR10) chr3:-:9269573..9271327
Molecular Weight (calculated) 34359.90 Da
IEP (calculated) 9.77
GRAVY (calculated) -0.75
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFVKSTKSN AYFKRYQVKF RRRRDGKTDY RARIRLINQD KNKYNTPKYR FVVRFTNKDI VAQIVSASIA GDIVKASAYA HELPQYGLTV GLTNYAAAYC
101: TGLLLARRVL KMLEMDDEYE GNVEATGEDF SVEPTDSRRP FRALLDVGLI RTTTGNRVFG ALKGALDGGL DIPHSDKRFA GFHKENKQLD AEIHRNYIYG
201: GHVSNYMKLL GEDEPEKLQT HFSAYIKKGV EAESIEELYK KVHAAIRADP NPKKTVKPAP KQHKRYNLKK LTYEERKNKL IERVKALNGA GGDDDDEDDE
301: E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)