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AT5G39850.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S4; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), Ribosomal protein S4, conserved site (InterPro:IPR018079), Ribosomal protein S4/S9, eukaryotic/archaeal (InterPro:IPR005710), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (TAIR:AT5G15200.1); Has 6814 Blast hits to 6810 proteins in 3349 species: Archae - 264; Bacteria - 730; Metazoa - 422; Fungi - 285; Plants - 4172; Viruses - 0; Other Eukaryotes - 941 (source: NCBI BLink).
Protein Annotations
BioGrid:19232eggNOG:COG0522eggNOG:KOG3301EMBL:AB010077
EMBL:AY088109EMBL:BT024915EMBL:CP002688EnsemblPlants:AT5G39850
EnsemblPlants:AT5G39850.1entrez:833981Gene3D:3.10.290.10GeneID:833981
Genevisible:Q9FLF0GO:GO:0003735GO:GO:0005829GO:GO:0006412
GO:GO:0009506GO:GO:0015935GO:GO:0016020GO:GO:0019843
Gramene:AT5G39850.1hmmpanther:PTHR11831hmmpanther:PTHR11831:SF11HOGENOM:HOG000194525
InParanoid:Q9FLF0IntAct:Q9FLF0InterPro:IPR001912InterPro:IPR002942
InterPro:IPR005710InterPro:IPR018079InterPro:IPR022801KEGG:ath:AT5G39850
KO:K02997OMA:GRHIRVGPANTHER:PTHR11831PaxDb:Q9FLF0
Pfam:PF00163Pfam:PF01479Pfam:Q9FLF0Pfscan:PS50889
PhylomeDB:Q9FLF0PRIDE:Q9FLF0PRO:PR:Q9FLF0PROSITE:PS00632
PROSITE:PS50889ProteinModelPortal:Q9FLF0Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_198801.1
scanprosite:PS00632SMART:SM00363SMART:SM01390SMR:Q9FLF0
STRING:3702.AT5G39850.1SUPFAM:SSF55174TAIR:AT5G39850TIGRfam:TIGR01018
TIGRFAMs:TIGR01018UniGene:At.43632UniProt:Q9FLF0
Coordinates (TAIR10) chr5:+:15950053..15951171
Molecular Weight (calculated) 23162.10 Da
IEP (calculated) 10.94
GRAVY (calculated) -0.80
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNVRFYRNY GKTFKKPRRP YEKERLDAEL KLVGEYGLRC KRELWRVQYT LSRIRNAARE LLTLDEKNPR RIFEGEALLR RMNRYGLLDE TQNKLDYVLA
101: LTVENFLERR LQTIVFKSGM AKSIHHARVL IRQRHIRVGR QLVNIPSFMV RVESQKHVDF SLTSPFGGGR PGRVKRRNER AGAKKASGGD GDEDDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)