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How to submit new localisation data to SUBA

SUBA5 is updated annually with the latest update date shown on the home page notice board. If you have published or found data that is not in SUBA5 please submit this subcellular location data to us. Currently we accept data in the format of PubMedID;location;AGI (e.g. 25900983;golgi;AT5G16280.1). The location categories must be cytoskeleton, cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid or vacuole. If you have data fitting these criteria please click the following:

We will assess your data and add it to our next scheduled update. If you have suborganellar data for any other location categories or Protein-Protein interaction data, please contact:

  • Cornelia Hooper (cornelia.hooper(at)uwa.edu.au)
Send us published subcellular localization data

How to submit your data

  • We require the data in the form:
    "PubMedID{sep}Location{sep}AGI" where {sep} is a comma or a tab or a space.
  • One AGI per line.
  • Location must be one that SUBA5 recognises: cytoskeleton, cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid or vacuole.
  • AGIs that are not in TAIR10 will be ignored.
  • Duplicates will be ignored: that means we have already added your data to SUBA5.
  • AGIs without splice isoforms will automatically have the .1 added.
  • PubMed IDs are 5-12 digits
PubMedID {sep} Location {sep} AGI
OR: 
If you have any problems please contact:
Cornelia Hooper (cornelia.hooper [at] uwa.edu.au) or
Ian Castleden (ian.castleden [at] uwa.edu.au)