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AT1G57860.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28524096 (2017): mitochondrion
  • PMID:26232565 (2015): cytosol cytosolic ribosomes
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Translation protein SH3-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57660.1); Has 1436 Blast hits to 1436 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 706; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2139eggNOG:KOG1732EMBL:AK227851EnsemblPlants:AT1G57660.1
EnsemblPlants:AT1G57860EnsemblPlants:AT1G57860.1entrez:842142entrez:842161
ExpressionAtlas:Q0WSS0Gene3D:2.30.30.70GeneID:842142GeneID:842161
GO:GO:0003735GO:GO:0005840GO:GO:0006412Gramene:AT1G57660.1
Gramene:AT1G57860.1hmmpanther:PTHR20981HOGENOM:HOG000194513InterPro:IPR001147
InterPro:IPR008991InterPro:IPR018259KEGG:ath:AT1G57660KEGG:ath:AT1G57860
KO:K02889OMA:TIVPIAYPANTHER:PTHR20981PaxDb:Q0WSS0
Pfam:PF01157Pfam:Q9FDZ9PhylomeDB:Q0WSS0PRIDE:Q0WSS0
PROSITE:PS01171ProteinModelPortal:Q0WSS0RefSeq:NP_564724.1RefSeq:NP_564726.1
scanprosite:PS01171SMR:Q0WSS0STRING:3702.AT1G57860.1SUPFAM:SSF50104
TAIR:AT1G57660TAIR:AT1G57860UniGene:At.21612UniGene:At.48314
UniGene:At.67877UniProt:Q0WSS0UniProt:Q9FDZ9
Coordinates (TAIR10) chr1:-:21430034..21430827
Molecular Weight (calculated) 18709.90 Da
IEP (calculated) 11.18
GRAVY (calculated) -0.68
Length 164 amino acids
Sequence (TAIR10)
(BLAST)
001: MPAGHGVRAR TRDLFARPFR KKGYIPLSTY LRTFKVGDYV DVKVNGAIHK GMPHKFYHGR TGRIWNVTKR AVGVEVNKQI GNRIIRKRIH VRVEHVQQSR
101: CAEEFKLRKK QNDVLKADAK ARGETISTKR QPKGPKPGFM VEGMTLETVT PIPYDVVNDL KGGY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)