AT5G26280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.985 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : TRAF-like family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:9208724..9210403 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39447.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.92 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 350 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN 101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ 201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW 301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)