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AT5G26280.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24012629 (2013): nucleus
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TRAF-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AY058050EMBL:BT002686
EMBL:CP002688EnsemblPlants:AT5G26280EnsemblPlants:AT5G26280.1entrez:832697
ExpressionAtlas:Q93Z83Gene3D:2.60.210.10GeneID:832697GO:GO:0009506
GO:GO:0016020Gramene:AT5G26280.1IntAct:Q93Z83InterPro:IPR002083
InterPro:IPR008974OMA:NGKLHKYPfam:PF00917Pfscan:PS50144
PhylomeDB:Q93Z83PROSITE:PS50144Proteomes:UP000006548RefSeq:NP_568484.1
SMART:SM00061STRING:3702.AT5G26280.1SUPFAM:SSF49599TAIR:AT5G26280
TMHMM:TMhelixUniGene:At.43555UniGene:At.46463UniProt:Q93Z83
Coordinates (TAIR10) chr5:+:9208724..9210403
Molecular Weight (calculated) 39447.60 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.30
Length 350 amino acids
Sequence (TAIR10)
(BLAST)
001: MNNQKWSIGF ISLAFLFITS SSAEFIIQQV TKGRGIEYNS SYSLEENLGV TRELREERPS SKIVTITSFS VIKGRGEPYE SSVFEAAGYK WRLVLYVNGN
101: KNDGGNDHIS LYARIEETNS LPLGWEVNVD LKLFVHNGKL HKYLTVTDGL VKRYNNAKKE WGFGQLIPRS TFYNANEGYL DQDTGSFGAE IFIVKPAQQQ
201: EKVTFISNPP NNVFTWKILR FSTLEDKFYY SDDFLVEDRY WRLGFNPKGD GGGRPHALPI FLFAQGHKAN AVATNTWGAV NLRLKNQRST NHRQIYSAAW
301: YPIGSGYGVG VNNIILLADL NDASKGYLVN DAIIFEAEMV KVSITNIVSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)