AT4G21600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : endonuclease 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops). | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
endonuclease 5 (ENDO5); FUNCTIONS IN: T/G mismatch-specific endonuclease activity, single-stranded DNA specific endodeoxyribonuclease activity, endonuclease activity, nucleic acid binding; INVOLVED IN: DNA catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Phospholipase C/P1 nuclease, core (InterPro:IPR008947), S1/P1 nuclease (InterPro:IPR003154); BEST Arabidopsis thaliana protein match is: endonuclease 4 (TAIR:AT4G21585.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:11485319..11487235 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33611.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.10 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLWIVSVLV LTHLVHGALC WGKDGHYTVC KLAEGFFEDD TIAAVKKLLP ESVDGGGLAD FCSWPDEIKK LSQWQWTSTL HYVNTPEYRC NYEYCRDCHD 101: THKHKDWCVT GAIFNYTNQL MSASENSQNI VHYNLTEALL FLSHYMGDVH QPLHTGFLGD LGGNTIIVNW YHNKSNLHHV WDNMIIDSAL ETYYNSSLPH 201: MIQALQAKLK NGWSNDVPSW KSCHFHQKAC PNLYASESID LACKYAYRNA TPGTTLGDEY FLSRLPVVEK RLAQGGIRLA ATLNRIFSAK PKLAGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)