AT5G06970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF810) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Mammalian uncoordinated homology 13, domain 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF810) (TAIR:AT4G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2158431..2166004 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124530.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 1101 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES 0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL 0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL 0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW 0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL 0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE 0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE 0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL 0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE 0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES 1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH 1101: G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)