AT3G50590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.500 plasma membrane 0.500 ASURE: nucleus,plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transducin/WD40 repeat-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 1315 Blast hits to 1225 proteins in 269 species: Archae - 0; Bacteria - 270; Metazoa - 540; Fungi - 221; Plants - 139; Viruses - 13; Other Eukaryotes - 132 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18771292..18779220 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 176316.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1614 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEWATVQHLD LRHVGRGVSK PLQPHTAAFH PSQAVIAVAV GSHIMEFDAL TGCKIASIDI GSPAVRMLYS PTSSNAVVAI LEDCTIRSCD FETEQTCVLH 0101: SPEKRSEHIS SDTEVHLAVT PLQPVVFFGF PKRMSVTVVG TVEGGRAPTK IKTDLKKPIV NIACHPRLPV LYVAYAEGLI RAYNIHTYAV HYTLQLDNTI 0201: KLIGASSFAF HPTLEWIFVG DRRGTLLAWD VSTERPNMIG ITQVGSQPIT SISWLPMLRV LVTVSKDGSL QVWKTRVIIN PNRPSTQTNF FEPAAMESID 0301: IPKILSQQGG EAVYPLPRIK TLEVHPKLNL AALIFANMVG NENTQNRAAQ TREGRKQLFA VLQSARGSSA SVLKEKLSSM GSSGILAEHQ LQALLQEHKG 0401: QSQLTISDIA RKAFLYSHFM EGHAKTAPIS RLPLITVVDT KDQLKDIPVC QPFHLELNFF NKPNRVLHYP VRSFYIEGLN LMAHNLCSGT DNIYKKLYTS 0501: IPGNVEYHSK HIVYSRKRHL FLVVFEFSGA TNEVVLYWEN TGSQLPNSKG STAKGCDAAF IGPNDDQFAI LDEDKTGLSM YILPKLTTME ENEKNLLSEE 0601: NQKKEADPSG IQGPQQFMFE TEVDRVFSTP IESTLMFACN GTQIGLAKLF QGYRLSASDG HYISTQGEGR KSIKLKKHEI ALQSFYSLPF NVVYIWPVLF 0701: EIKTIMFRKL TRHVQWQETP RGYVAGILTT QRVLMVSLLW VGPALLFSTT TAVCLLGWDG KVRTILSIST PYAALVGALN DRLLLAHPTD ISPKQKKGIE 0801: IKSCLVGLLE PLLIGFSTMQ QTFEQKVDLS EILYQITTRF DSLRITPRSL DILARSAPVC GDLAVSLAQA GPQFNQVLRC AYAIKALRFS TALSVLKDEF 0901: LRSRDYPKCP PTSLLFQRFR QLGYACIKYG QFDSAKETFE VIGDYESMLD LFICHLNPSA MRRLAQKLEE ESGDPELRRY CERILRVRST GWTQGIFANF 1001: AAESMVPKGP EWGGGNWEIK TPTDMKSIPK WELAGEVMPY MKNEDGTIPS IVADHIGVYL GCVKGRVNVV EIKEDSLVSK PGGLSLLGKP VSDKPLALPA 1101: GESSSMMGLE SLGKQNVADE QAKAAEEFKK TMYGATGDGS SSDEEGVTKP KKLQIRIREK PTSTTVDVNK LKEAAKTFKL GDGLGLTMSR TKSINAGSQD 1201: LGQMLSQPSS STVATTTAPS SASAPVDPFA MSSWTQQPQP VSQPAPPGVA APIPEDFFQN TIPSVEVAKT LPPPGTYLSK MDQAARAAIA AQGGPNQANN 1301: TPLPDIGLPD GGVPQQYPQQ TSQQPGAPFQ TVGLPDGGVR QQYPGQNQVP SQVPVSTQPL DLSVLGVPNT GDSGKPPGQP QSPPASVRPG QVPRGAAAPV 1401: CFKTGLAHLE QNQLPDALSC FDEAFLALAK DQSRGADIKA QATICAQYKI AVTLLREILR LQRVQGASAL SAKDEMARLS RHLASLPLLA KHRINCIRTA 1501: IKRNMEVQNY GYSKQMLELL LSKAPASKQE ELRGLVDLCV QRGTSNKSID PLEDPSQLCS ATLSRLSTIG YDVCDLCGAK FAALSSPGCI ICGMGSIKRS 1601: DALAGPAPVS TPFG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)