AT2G45540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WD-40 repeat family protein / beige-related | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60920.1); Has 15175 Blast hits to 9236 proteins in 536 species: Archae - 8; Bacteria - 4185; Metazoa - 4754; Fungi - 2919; Plants - 1203; Viruses - 0; Other Eukaryotes - 2106 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:18757881..18772229 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 321953.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.64 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2946 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEDDDERKLP EADIANPLHN RIEAFDTTLQ GISSADRAFK DDDFEQVSLG DQEKAANESQ GDLQEPGSFS NSDHGRSSFG GTEVVTYQLS GTQEMYDLMP 0101: MDDVQSDRLS SPGPEREAAY SMQQSLSETS LDSVHHPESG YSPVHSPQKP KPKATVPNVS PELLHLVDSA IMGKPESLDK LKNVVCGIEN FGCGEESEAT 0201: AFLVVDSLIA TMGGVESFEE DEDSNPPSVM LNSRAAIVSG ELIPWLPGLG DNVNFMSPRT RMVRGLLVIL RSCTRNRAMC STAGLLGVLL RSVEAIISKD 0301: VDMKWNAAAI LLLCIQHLAG HSLSVDDLHR WLQVIKAAIT TAWSSPLMLA LEKAMSGKES RGPACTFEFD GESSGLLGPG ESRWPFTNGY AFATWIYIES 0401: FADTLNAATA AAAIAAAAAA KSGKTSAMSA AAAASALAGE GTAHMPRLFS FLSADNQGIE AYFHAQFLVV ESGSGKGRKS SLHFTHAFKP QCWYFIGLEH 0501: SCKQGLLGKA ESELRLYIDG SLYESRPFDF PRISKPLSFC CIGTNPPPTM AGLQRRRRQC PLFAEMGPVY IFKEPIGPER MARLASRGGD VLPCFGNGAG 0601: LPWLATNDYV RNKAEESSIL DADIGGYTHL LYHPCLLSGR FCPDASLSGA AGTLRRPAEV LGQVHVATRM KPVESFWALA YGGPMSLLPL TVSSVHKDSL 0701: EPCLGNLPLS LSTVTLAAPV FRIMSVAIQH PGNNEELCRT QGPEILARIL SYLLHSLASL DRKHDGVGEE ELVAAIVSLC QSQKINHVLK VQLFRTLLLD 0801: LKIWSLCNYG LQKKLLSSLQ DMVFTEATAM RDAEAIQLLL DGCRRCYWMI SEKDSETTFP LDGNTRQMGE LNALIDELLV IIELLMGAAS PSLAADDLRR 0901: LLGFIIDSPQ PNQVARVLHL MYRLVVQPNA ARAQMFAEVF ITSGGIETLL VLLQREAKTG EDNVLAMGRS GKRSSTDPSE KSPYNESGSV KQLDSNPHDN 1001: EIGFDLPGPD GNSVEDDNVG SLNVPESVRQ EKEHGSTPVV CDSDSVSISN SINTERLSAE IGGISLSISA DSARNNVYNV DNSDAVVVGI IRLIGALISS 1101: GHLTFDFDAR SDVTSNILGS GLHENGGTMF DDKVALLLFA LLKAFQAAPN RLMTDNVYTT LLGASINASS TEDGLNFYDS GHRFEHSQLL LVLLRSLPSA 1201: SKALQSRALQ DLLFLACSHP ENRSSLTTME EWPEWILEIL ISNYEKDAGK QSASVGSCEV EDMIHNFLII MLEHSMRQKD GWKDIEATIH CAEWLSIVGG 1301: SSTGEQRIRR EESLPIFKRR LFGGLLDFAA RELQAQTQVI AAAAAGVAAE GLAPKDAKAG AENAAQLSVF LVENAIVILM LVEDHLRSQS KQTCATNAVA 1401: SPSPLKKRTS TLTAIGESSE ISSSRASLSS DSGKVPLDIL ASMADSSGQI SAVAMERLTA ASAAEPYESV SCAFVSYGSC AMDLAEGWKY RSRLWYGVGL 1501: PSKPSSLGGG GSGSDSWKST LEKDAHGNWI ELPLVKKSVS MLQALLLDES GLGGGLGIGG GSGTGMGGMT ALYQLLDSDQ PFLCMLRMVL LSMREEDYGE 1601: DNMLMRNLSS ERSSGNSVTL DSGSQMSMRQ SRSALLWSVL SPIINMPISD SKRQRVLVTA CVLYSEVWHA ISRDRRPLRK QYIEAIVPPF IAVLRRWRPL 1701: LAGIHELATA DGMNPLVVDD RALAADALPV EGALSMVTPE WAAAFASPPA AMSLAMIAAG AAGWEAPPPP TPSHLRRDSS MLERKTAKLQ TFSSFQKPLE 1801: PPNNNAPPRP RDKAAAKAAA LAAARDLERN AKIGSGRGLS AVAMATSAQR RNIGDMERLQ RWNTSEAMGV AWMECLQPVD TKSVYGKDFN ALSYKFIAVL 1901: VASFALARNM QRSEIDRRMQ DDIIAANRLC LGSRAWRKLI RYLAEMRCFF GPFGDGICSP ERVFWKLDSM ESFSRMRQSI RRNYSGTDHH GAAADYDDQT 2001: ETKSDNGSKG SQSNPPVVAA EVILMEIAYE EDEHGEGDQL DVKGNAEEHK RDEGRISGSH EHASRTSAGN SDPRTSNDLE MVRDSSVVAP GFVPSELDER 2101: ILLELPTSMV RPLRVVKGTF QITTRRINFI VDNRESQNLA DHSDESQSGD QEKDRSWPMS SLHQIYSRRY LLRRSALELF MVDRSNFFFD FGNTEGRRNA 2201: YRAIVQARPP HLNNIYLATQ RPEQLLRRTQ LMERWARWEI SNFEYLMQLN TLAGRSYNDI TQYPVFPWII SDNSSESLDL SNPSTFRDLS KPIGALNPER 2301: LKKFQERYSS FEDPVIPKFH YGSHYSSAGA VLYYLARVEP FTTLSIQLQG GKFDHADRMF SDFPGTWNGV LEDMSDVKEL VPELFYLPEV LTNENSIDFG 2401: TTQLGEKLDA VKLPPWAKNP VDFVHKQRRA LESEHVSAHL HEWIDLIFGY KQRGKEAIMA NNVFFYITYE GTVDIDKITD PVQQRATQDQ IAYFGQTPSQ 2501: LLTVPHMKRM PLKDVLHMQT IFRNPKEIKP YTVQTPERCN LPASAIQASS DSVVIVDMNV PAARVAQHKW QPNTPDGQGT PFLFHHGKAT TTSTSGSLMR 2601: MFKGPASSGT GDWQFPQAQA FASSGIRSSS VIAITSDGEI ITGGHADNSI KLVSSDGAKT LETAFGHCAP VTCLALSPDN NFLVTGSRDS TVLLWRIHKA 2701: FTSRTSVSEP STGSGAPSST SNTNLANTLA NKGKKCRLEG PIQVLRGHRR ELVCCCVSSD QGVVVSSSES SDVLLHSIRK GRLIRRLVGV KADSLCISSD 2801: GVIMAWSSSE GSISVFTING VLIAKAKFPL FCSVGCMEIS MDGQNALIGM NSCSNSDYSS SNDTSKDSKE IERLDVPSPS ICFLNLYTLQ VFHVLKLGQG 2901: QDITALALNV DNTNLLVSTE DKQLIIFTDP ALSLKVVDQM LKLGWE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)