AT1G55860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-protein ligase 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ubiquitin-protein ligase 1 (UPL1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, membrane; EXPRESSED IN: guard cell, cultured cell, trichome, leaf; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1); Has 8980 Blast hits to 7230 proteins in 418 species: Archae - 33; Bacteria - 397; Metazoa - 4053; Fungi - 1646; Plants - 643; Viruses - 68; Other Eukaryotes - 2140 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20879900..20895393 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 432637.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 3930 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAIAEEVTVF AETSLGTRIV MAVPLDITAA DFKRKLEKTH ASCLSSVGEI EVHGLMVKRK SRFYHLVESV PIRYIFLDNQ KPWFIHAEAR VVSRSQESSV 0101: SNSIDKTHIR HCHGSDNSIE RVTALIQGKD KKIKKSRAKS DSRNVASGQE TCLDKREYLG PSTSEPETIK SLPSIARVAE MKNSECFKSF TPKPPERKPV 0201: DSESESIGKR ITVAANNIRM QGKTHNSSSL SSSIFRSNSC RNRSLDGKII TSLAKFMVFE PSKIKSFINS VTSVPLELIH EPLACFRWEF DKGDFHHWVD 0301: LFNYFDTFFE KHVQVRKDLH IEENFEESDP PFPKDAVLQV LRVIRVVLEN CTNKHFYSSY EQHLSLLLAS TDADVVEACL QTLAAFLKRQ IGKYSIRDAS 0401: LNSKLFSLAQ GWGGKEEGLG LTSCAAENSC DQVSLQLGRT LHFEFYPSDE SPSELPGGLQ VIHVPDVSIC AESDLELLNK LVIDHNVPPS LRFALLTRMR 0501: FARAFSSLAT RQQFTCIRLY AFVVLVQASG DTENVVSFFN GEPEFVNELV TLVSYEDTVP EKIRILCLLS LVALSQDRTR QPTVLTAVTS GGHRGLLSGL 0601: MQKAIDSVVC ITSKWSLAFA EALLSLVTVL VSSSSGCSAM REAGLIPTLV PLIKDTDPQH LHLVSAAVHI LEAFMDYSNP AAALFRDLGG LDDTIFRLKL 0701: EVSRTEDDVK EKNCSSDSNG PDTEQLPYSE ALISYHRRLL LKALLRAISL GTYAPGNTNL YGSEESLLPE CLCIIFRRAK DFGGGVFSLA ATVMSDLIHK 0801: DPTCFNALDS AGLTSTFLDA ISDEVICSAE AITCIPQCLD ALCLNNSGLQ AVKDRNALRC FVKIFTSPSY LRALTGDTPG SLSSGLDELL RHQSSLRTYG 0901: VDMFIEILNS MLIIGSGMEA TTSKSADVPT SAAPVPMEID VDEKSLAVSD EAEPSSDTSP ANIELFLPDC VCNVARLFET VLQNAEVCSL FVEKKGIDAV 1001: LQLFSLPLMP LSTSLGQSFS VAFKNFSPQH SAGLARIVCS YLREHLKKTK ILLVSIEGTQ LLKLESAIQT KILRSLSCLE GMLSLSNFLL KGSASVISEL 1101: SAADADVLKE LGITYKQTIW QMALCNDTKE DEKKSVDRGS DNSVSASSST AERESDEDSS NALAVRYTNP VSIRSSSSQS IWGGDREFLS IVRSGEGIHG 1201: RTRHAIARMR GGRTRRHLES FNFDSEIPAD LPVTSSSHEL KKKSTEVLIA EILNKLNCTL RFFFTALVKG FTSANRRRID GASLSSASKT LGTALAKVFL 1301: EALNFDGYGA AAGHEKSLSV KCRYLGKVVD DITFLSFDTR RRVCFTAMVN SFYVHGTFKE LLTTFEATSQ LLWTVPFSIP ASSTENEKPG ERNIWSHSKW 1401: LVDTLQNYCR ALDYFVNSTY LLSPTSQTQL LVQPASVGLS IGLFPVPREP ETFVRNLQSQ VLDVILPIWN HPMFPDCNPN FVASVTSLVT HIYSGVVDAR 1501: ENRSGVTRGI NQRALPLQLD ESIVGMIVEM GFSRSRAEIA LRRVGTNSVE MAMDWLFTNP EQPVQEDDEL AQALALSLGN SSETPKLEDT EKPVDVPQEE 1601: AEPKEPPVDE VIAASVKLFQ SDDSMAFPLM DLFVTLCNRN KGEDRPKIVS YLIQQLKLVQ LDFSKDTGAL TMIPHILALV LSEDDNTREI AAQDGIVTVA 1701: IGILTDFNLK SESETEILAP KCISALLLVL SMMLQAQTKL SSEYVEGNQG GSLVPSDSPQ DSTAALKDAL SSDVAKGESN QALELIFGKS TGYLTMEEGH 1801: KALLIACGLI KQHVPAMIMQ AVLQLCARLT KSHALAIQFL ENGGLSSLFN LPKKCCFPGY DTVASVIVRH LVEDPQTLQI AMETEIRQTL SGKRHIGRVL 1901: PRTFLTTMAP VISRDPVVFM KAVASTCQLE SSGGRDFVIL SKEKEKPKVS GSEHGFSLNE PLGISENKLH DVSGKCSKSH RRVPANFIQV IDQLIDLVLS 2001: FPRVKRQEDG ETNLISMEVD EPTTKVKGKS KVGEPEKASS SRVGEPEKAE IPEKSEELAR VTFILKLLSD IVLMYSHGTS VILRRDTEIS QLRGSNLPDD 2101: SPGNGGLIYH VIHRLLPISL EKFVGPEEWK EKLSEKASWF LVVLCSRSNE GRKRIINELS RVLSVFASLG RSSSKSVLLP DKRVLAFANL VYSILTKNSS 2201: SSSSNFPGCG CSPDVAKSMM DGGTIQCLTS ILHVIDLDHP DAPKLVTLIL KSLETLTRAA NAAEQLKSEV PNEKKNRDSD ERHDSHGNST ETEADELNQN 2301: NSSLQQVTDA AGNGQEQAQV SSQSAGERGS SQTQAMPQDM RIEGDETILP EPIQMDFMRE EIEGDQIEMS FHVENRADDD VDDDMGDEGE DDEGDDEDAD 2401: LVEDGAGVMS LAGTDVEDPE DTGLGDEYND DMVDEDDDDF HENRVIEVRW REALDGLDHF QILGRSGGGN GFIDDITAEP FEGVNVDDLF ALRRPLGFER 2501: RRQTGRSSLD RSGSEVHGFQ HPLFSRPSQT GNTASVSASA GSISRHSEAG SYDVAQFYMF DTPVLPFDQV PVDPFSARLA GGGAPPPLTD YSVVGMDSSR 2601: RGVGDSRWTD IGHPQPSSLS ASIAQLIEEH FISNLRASAP VNTVVERETN TTEIQEQLHP DVPPSVGSET VLGDGNEGGQ QSEERELLNN NENVNNPPDV 2701: MAESFAQGQA NLASPVSQDT GESLQQLEVM QPLPLNSTPN EIDRMEVGEG DGAPIDQVDH EAVHLISTAQ GQPDTSSIQN VSVTAIAPPV DDPDSNFQPS 2801: VDVDMSSDGA EGNQSVQPSP LDGDNNELSS MEATENVRND EQVEEGSLDG RAPEVNAIDP TFLEALPEDL RAEVLASQQA QSVQPPTYEP PPVDDIDPEF 2901: LAALPPDIQT EVLAQQRAQR MVQQSQGQAV DMDNASIIAT LPADLREEVL LTSSEAVLAA LPSPLLAEAQ MLRDRAMSHY QARSSVFGSS HRLNNRRNGL 3001: GYNRLTGMDR GVGVTIGQRA VSSSADGLKV KEIEGDPLVN ADALKSLIRL LRLAQPLGKG LLQRLLLNLC AHSFTRANLV QLLLDMIRPE METSPSELAI 3101: TNPQRLYGCQ SNVVYGRSQL LNGLPPLVFR RVLEVLTYLA TNHSAVADML FYFDSSLLSQ LSSRKGKEKV THVTDSRDLE IPLVVFLKLL NRPQLLQSTS 3201: HLGLVMGLLQ VVVYTAASRI EGWSPSSGVP EKLENKPVGE EASSETRKDA ESELVGEADL SVARRKNCAE IYNIFLQLPQ SDLCNLCILL GYEGLSDKIY 3301: SLAGEVLKKL AAVDVAHRKF FTKELSELAS SLSSSTVREL ATLSSKQKMS RSTGSMAGAS ILRVLQVLSS LTSPIDESNV GTERETEQEE QNIMQRLNVA 3401: LEPLWHELSQ CISMTELQLD HTAAASNINP GDHVLGISPT SSLSPGTQRL LPLIEAFFVL CEKIQTPSML QQDTNVTAGE VKESSAHGSS SKTSVDSQKK 3501: TDGSVTFSKF AEKHRRLLNS FIRQNPSLLE KSLSMMLKAP RLIDFDNKKA YFRSRIRHQH DQHISGPLRI SVRRAYVLED SYNQLRMRSP QDLKGRLNVQ 3601: FQGEEGIDAG GLTREWYQLL SRVIFDKGAL LFTTVGNDAT FQPNPNSVYQ TEHLSYFKFV GRMVAKALFD GQLLDVYFTR SFYKHILGVK VTYHDIEAVD 3701: PDYYKNLKWL LENDVSDILD LTFSMDADEE KHILYEKTEV TDYELKPGGR NIRVTEETKH EYVDLVAGHI LTNAIRPQIN AFLEGFNELI PRELVSIFND 3801: KELELLISGL PEIDFDDLKA NTEYTSYTAG SPVIHWFWEV VKAFSKEDMA RFLQFVTGTS KVPLEGFKAL QGISGPQRLQ IHKAYGAPER LPSAHTCFNQ 3901: LDLPEYQSKE QLQERLLLAI HEASEGFGFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)