AT5G24350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8301537..8310746 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 266828.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.97 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||
| Length | 2376 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MESPGRKVLY EIRHHASLPY VPRYPPLPQA DGTNSKGGLR SLVSIKGVSQ LKEKWSEYWN PKKTNKPVSL FISPRGELVA VTSGNHVTIL RKDDDYRKPC 0101: GNFTSSISGS FTSGVWSEKH DVLGLVDDSE TLFFIRANGE EISQVTKRNL KVSAPVLGLM EDDSDLQPSC LCSFSILTSD GRIHHVEISR EPSASAFSKH 0201: ASNSVSKQFP NHVFCFDYHP DLSFLLIVGS VAGISSSGSS GSSCISLWRK CQNLGLELLS TTKFDGVYCE NKDDQLAYPK TLISPQGSHV ASLDSNGCVH 0301: IFQLDKARLT LSCCPSEDSS DSLKPDKSLQ SWKESLRNVV DFTWWSDHAL AILKRSGNIS IFDISRCVIV QEDATIYSMP VVERVQKYEG HIFLLESSTQ 0401: EAKSALANVD RDASEFHHTS EHSMLWRLIS FTEKTIPEMY KILVEKCQYQ EALDFSDSHG LDRDEVFKSR WLKSEKGVSD VSTILSKIKD KAFVLSECLD 0501: RIGPTEDSMK ALLAHGLYLT NHYVFAKSED QESQQLWEFR LARLRLLQFS ERLDTYLGIS MGRYSVQDYR KFRSNPINQA AISLAESGRI GALNLLFKRH 0601: PYSLVSFMLQ ILAAIPETVP VETYAHLLPG KSPPTSMAVR EEDWVECEKM VKFINNLPEN GKNDSLIQTE PIVRRCLGYN WPSSEELAAW YKSRARDIDS 0701: TTGLLDNCIC LIDIACRKGI SELEQFHEDL SYLHQIIYSD EIGGEICFSL SLAGWEHLSD YEKFKIMLEG VKADTVVRRL HEKAIPFMQK RFLGTNNQNV 0801: ESFLVKWLKE MAAKSDMDLC SKVIDEGCID LYTVCFFKDD VEAVDCALQC LYLCKVTDKW NVMATMLSKL PKINDKAGED IQRRLKRAEG HIEAGRLLEF 0901: YQVPKPINYF LEVHLDEKGV KQILRLMLSK FVRRQPGRSD NDWACMWRDL RQLQEKAFYF LDLEFVLTEF CRGLLKAGKF SLARNYLKGT GSVALPSEKA 1001: ESLVINAAKE YFFSAPSLAS EEIWKARECL NIFSSSRTVK AEDDIIDAVT VRLPKLGVSL LPVQFKQVKD PMEIIKMAIT GDPEAYLHGE ELIEVAKLLG 1101: LNSSEDISSV KEAIAREAAI AGDMQLAFDL CLVLTKEGHG PIWDLGAAIA RSPALEHMDI SSRKQLLGFA LGHCDDESIS ELLHAWKDFD LQGQCETLGM 1201: LSESNSPEFQ KMDGVSCLTD FPQMLDGLSS DQQLDLDRAK DSISCVAKDM PVDDSVDLES LLKENGKLFS FAASHLPWLL KLGRNRKLDK SLVLDSIPGK 1301: QFVSIKATAL ITILSWLAKN GFAPKDELIA MITDSIIEHP VTKEEDVIGC SFLLNLVDAS NAVEVIEKQL RIRGNYQEIR SIMSLGMIYS LLHDSGVECT 1401: APIQRRELLQ KNFERKQTES LADDMSKIDK LQSTFWKEWK HKLEEKMHDA DRSRMLERII PGVETERFLS HDIEYIKVAV FSLIESVKSE KKLILKDVLK 1501: LADTYGLKQS EVILRYLSSI LCSEIWTNED ITAEILQVKE EILTFASDTI ETISTIVYPA ASGLNKQRLA YIYSLLSECY CHLAESKEAS LLVQPNSSFA 1601: GLSNWYNVLK QECSRVSFIK DLDFKNISEL GGLNFDSFNN EVHAHINEMN LEALAKMVET LSGLSMENSS KGLISCQDVY KQYIMNLLDT LESRRDLDFG 1701: SAESFQGFLG QLEKTYDHCR VYVRILEPLQ AVEILKRHFT LVLPPNGSYM HIPDSSTWQE CLILLINFWI RLADEMQEVK SSNPSLVENL TLSPECISSC 1801: FTLLIKLVMY DSLSPSQAWA AILVYLRSGL VGDCATEIFN FCRAMVFSGC GFGPISDVFS DMSSRYPTAL QDLPHLYLSV LEPILQDLVS GAPETQNLYR 1901: LLSSLSNLEG NLEELKRVRL VVWKQLVIFS ENLELPSQVR VYSLELMQFI SGKNIKGSSS ELQSNVMPWD GSAELLSSMQ KTEAALNQAL PDQADGSSRL 2001: TNTLVALKSS QVAVAAISPG LEISPEDLST VETSVSCFSK LSAAVTTASQ AEALLAILEG WEELFEAKNA ELLPSNEATD QGNDWGDDDW NDGWETLQES 2101: EPVEKVKKEC VVSAHPLHSC WLDIFRKYIA LSMPENVLQL IDGSLQKPEE VIIEETEAES LTGILARTDP FLALKISLLL PYKQIRSQCL SVVEEQLKQE 2201: GIPELSSQSH HEVLLLVIYS GTLSTIISNA CYGSVFSFLC YLIGKLSREF QEERITQADN RESNASSESR FISCFGQLMF PCFVSGLVKA DQQILAGFLV 2301: TKFMHSNPSL SLINVAEASL RRYLDKQLES LEHLEDSFAE SSDFETLKNT VSSLRGTSKE VIRSALASLS NCTNSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)