AT5G15680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.892 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5101188..5110793 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 242512.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 2153 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKSGSAAKLI VEALLQRFLP LARRRIETAQ AQDGQYLRPS DPAYEQVLDS LAMIARHTPV PLLEALLRWR ESESPKGAND ASTFQRKLAV ECIFCSACIR 0101: FVECCPQEGL TEKLWSGLEN FVFDWLINAD RVVSQVEYPS LVDLRGLLLD LVAQLLGALS RIRFSSVTER FFMELNTRRI DTSVARSETL SIINGMRYLK 0201: LGVKSEGGLN ASASFVAKAN PLIRDIHKRK SELYHALCNM LSNILAPLSD GGKSQWPPSV AEPALTLWYE AVGRIRVQLI QWMEKQSKHL GVGYPLVSLL 0301: LCLGDPLIFH HNLSSHMEQL YKLLRDKNHR YMALDCLHRV LRFYLSVYAS SQPPNRIWDY LDSVTSQLLT VLRKGMLTQD VQQDKLVEFC VTIAEHNLDF 0401: AMNHMLLELL KQDSPSEAKI IGLRALLALV MSPSSQYVGL EIFKGHGIGH YIPKVKAAIE SILRSCHRTY SQALLTSSRT TIDAVNKEKS QGSLFQSVLK 0501: CIPYLIEEVG RSDKITEIIP QHGISIDPGV RVEAVQVLNR IVRYLPHRRF AVMRGMANFI LKLPDEFPLL IQASLGRLLE LMRFWRACLV DDRQDTDAEE 0601: ENKTAKGNDR FKKLSFHQAA DAIEFRASDI DAVGLIFLSS VDSQIRHTAL ELLRCVRALR NDIRDLMIQE HPDHVMKFEA EPIYMIDVLE EHGDDIVQSC 0701: YWDSARPFDL RRDSDAIPSD VTLQSIIFES LDKNKWGRCL SELVKYAAEL CPRSVQEAKS EIMHRLAHIT PVEFGGKANQ SQDTDNKLDQ WLLYAMFVCS 0801: CPPDGKDAGS IASTRDMYHL IFPYLRFGSE THNHAATMAL GRSHLEACEI MFSELASFME EISSETETKP KWKIQKGGRR EDLRVHVSNI YRTVSENVWP 0901: GMLARKPVFR LHYLRFIEDS TRQISLAPHE SFQDMQPLRY ALASVLRFLA PEFVESKSEK FDVRSRKRLF DLLLSWSDDT GNTWGQDGVS DYRREVERYK 1001: TSQHNRSKDS VDKISFDKEL NEQIEAIQWA SLNAMASLLY GPCFDDNARK MSGRVISWIN SLFIEPAPRV PFGYSPADPR TPSYSKYTGE GGRGTTGRDR 1101: HRGGHQRVAL AKLALKNLLL TNLDLFPACI DQCYYSDAAI ADGYFSVLAE VYMRQEIPKC EIQRLLSLIL YKVVDPSRQI RDDALQMLET LSMREWAEDG 1201: IEGSGGYRAA VVGNLPDSYQ QFQYKLSCKL AKDHPELSQL LCEEIMQRQL DAVDIIAQHQ VLTCMAPWIE NLNFWKLKDS GWSERLLKSL YYVTWRHGDQ 1301: FPDEIEKLWS TIASKPRNIS PVLDFLITKG IEDCDSNASA EITGAFATYF SVAKRVSLYL ARICPQRTID HLVYQLSQRM LEDSIEPIGY SANRGDSNGN 1401: FVLEFSQGPA TAPQVVSVAD SQPHMSPLLV RGSLDGPLRN TSGSLSWRTA GMTGRSASGP LSPMPPELNI VPVATGRSGQ LLPSLVNASG PLMGVRSSTG 1501: SLRSRHVSRD SGDYLIDTPN SGEDVLHSGI AMHGVNAKEL QSALQGHQQH SLTHADIALI LLAEIAYEND EDFREHLPLL FHVTFVSMDS SEDIVLEHCQ 1601: HLLVNLLYSL AGRHLELYEV ENSDGENKQQ VVSLIKYVQS KRGSMMWENE DPTVVRTDLP SAALLSALVQ SMVDAIFFQG DLRETWGTEA LKWAMECTSR 1701: HLACRSHQIY RALRPSVTSD ACVSLLRCLH RCLSNPIPPV LGFIMEILLT LQVMVENMEP EKVILYPQLF WGCVAMMHTD FVHVYCQVLE LFSRIIDRLS 1801: FRDKTTENVL LSSMPRDEFN TNDLGEFQRS ESRGYEMPPS SGTLPKFEGV QPLVLKGLMS TVSHEFSIEV LSRITVPSCD SIFGDAETRL LMHITGLLPW 1901: LCLQLTQDQV MVSALPLQQQ YQKACSVASN IAVWCRAKSL DELATVFVAY ARGEIKRVEN LLACVSPLLC NKWFPKHSAL AFGHLLRLLK KGPVDYQRVI 2001: LLMLKALLQH TPMDASQSPH MYTIVSQLVE STLCWEALSV LEALLQSCSP VQGGTGGSHP QDSSYSENGT DEKTLVPQTS FKARSGPLQY AMMAATMSQP 2101: FPLGAAAAES GIPPRDVALQ NTRLMLGRVL DNCALGRRDY RRLVPFVTTI ANM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)