AT1G02080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription regulators | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transcription regulators; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:373335..386682 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 269902.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.34 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||
| Length | 2431 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MYSKTIENPD ETSPRIMWAL KRVSYSRGST ENPRRKSPSP VVPGISDLGF PYLMTPSKVA GHTRFLLHSF HDSDVDSIAL QLSQFVDFGV ETSIPVLKTC 0101: LDCFTARRSH PNSLQLEKVV SLLFKHVLKL SNLATLLPHA LNDFELTQES VDDLTTTLNF SISENIGFAL ALTDFERLDA KTTGRNLLLA QIEQLCANTG 0201: QILSSELIHS VLSFLRKSED LSMHLDSFLQ FLSSAQPRDD FSFALTPMLA QQVHEAPVFR SMDFHTDSAD NDLDAILAEI DKEVSVGDLM GELGCGFTAD 0301: AQQCKEILSS FAPLGEATIS RIVGNVSRTC ADLEDNQTTF STFTVALGSC IPTELPTPRS WNVDILVDTI KQLQAPGISW RKVIENLDHD GFDIPNMESF 0401: SFFMRIYKAA CKEPFPLDAV CGSVWKNMDG QLSFLKHAIS APPEVFTFMH SPRKLVYIDN MHSQEQQLGL SNHAWLSLDL LDVLCQLAER GHAVLVSSLL 0501: QYPLTQCPRT LLLGMTHIKT AYNLIQREVV SAILPVIITS PQDSGFIHNL WHQNAELVLW GIIDAQHLKA DSMLRIIEIC HELKILSVVL ESVPVSSSIR 0601: LAVLASLRGL LDIENWLPNC LYMYKDLFAE ECLKFVKNVH FSESDDFRAK IFHPSDPLSD LHLEATTSLL KVLKAHDNAI TSSQLVEEIE KVNAAILDCN 0701: PKLQNGEAKD SSAPNAYGDD VEAEANAYFH QMFSSHLSVD AMVQMLSRYK ESLVPREKLI FECMIANLFE EYRFFPKYPE RQLKIASILF GSVIKHQLIS 0801: SLTLGMALRL VLDSLRKPAD SKMFLFGSKA LEQFVNRLVE LPQYCNHILQ ISHLRSTHPE LVTVIEQALS RISSGNLESD ASVSHPGPSQ SFPGNGELSG 0901: SGIGQPALQL SSPLQLQQKN EVPSVPSNEA KPLLPSLSTT SVDVSVNPKN PGIPTSSSTS TGFVRPARAT TSTRFGSALN IETLVAAAER RENAIEAPPS 1001: DVQDKVSFII NNISTTNIES KGKEFAEILP QQYYPWFAQY MVMKRASIEP NFHDLYLKFL DKVDSKLLFK EILQNTYENC KVLLGSELIK SSSEERSLLK 1101: NLGSWLGRLT IGRNYVLRAR EIDPKSLIVE AYEKGLMIAV IPFTSKVLEP CQNSIAYQPP NPWTMAILGL LAEIYSMPNL KMNLKFDIEV LFKNLGVEMK 1201: EVVPTSLLKD RKREIDGNPD FSNKDPGVTQ ISQPQMIPEP KTISPLKQID LPLDVANSPN TDVPSKLLSQ YVAPQRVYTN TLMDEEKVAT LGLPEQLPSP 1301: QGLFQSTPSP LFSISQLSAA LPNIGNHVVI NQKLSAFGMH FPFQRVVPLA MDRAIKEIVS GIVQRSVCIA CQTTKELVLK DYALEPDESR IYNAAHLMVA 1401: SLAGSLAHVT CKEPLRTSIS GHLRNSLQGL NISNDALEQI VQLVTNDNLD LGCAAIEQAA TEKAIQTIDA DIAQQLLLRR KHRDGAGSSF FDPNILSQNS 1501: VSFIPESLRP KPGHLSLSQQ RVYEDFVQHP WQKQSTQTSH GLSAASSSSG DVALGSGYGP VSGKVASEFL SNAGNARMDM VSRPSDISVD GFESSPVSLL 1601: SSQVDPAGDS SSLQFTKSLP TSELNLAESS DAATKETGTS LQTLTSAATM ERLGASNITQ PSLSTRDALD KCQIVTQKME ELVANNAGDD EIQAVISEVP 1701: EIILRCISRD EAAFAVAQKA FKALYENASS NLHVSANLAI LVAIRDVCKR VVKELTSWVI YSEEDRKLNK DITIGLIQRE LLSLAEYNVH MAKHLDGGRN 1801: KTATDFAISL LQSLVTEESS VISELHSLVD ALAKLASKSG SSESLQQLID IIRNPVTNTA GLSDSSTGND NNDRQKDEKV ACNTTNTEES TSLDYVESDP 1901: AGFQNRVSTL FKNWYQICEL PGANETACSQ YVLHLHQTGL LKGDDTTESF FRILLELSVA HCISSEDINS GAVQSPQQPQ SPSFLIIDMY AKLVFSILKY 2001: FPEQESSSRL FLLSEIMADT VRFIQKDAED KKTSLNSKPY FRLFINWLLD LCSLDPGTDG ANFQVLTAFA NAFHALQPLK IPAFSFAWLE LVSHRSFMPK 2101: LLTVNGQKGW PYVQRLLVDL LQFLEPFLRN AELGGPVHFL YKGTLRVLLV LLHDFPEFLC DYHFTFCDVI PSSCIQMRNI ILSSFPRNMR LPDPSTPNLK 2201: IDLLPEIVEA PCILSEVDAA LKAKQMKNDV DEYLTSRQQN STFLSELKTK LLLSSSEASS AGTRYSVPLI NSLVLYTGMQ AIQQLQAGET QAQNVVALQM 2301: FKYLSMELDT EGRYLFLNAI ANQLRYPNNH THYFSFIMLY LFFESDQEII QEQITRVLLE RLIVNRPHPW GLLITFIELI KNPRYSFWKQ AFIRCAPEIE 2401: KLFESVARSC GGLKPVDEGM VSGGWVSDNS H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)