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AT1G02080.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22318864 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : transcription regulators
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
transcription regulators; FUNCTIONS IN: transcription regulator activity; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196); Has 1434 Blast hits to 680 proteins in 246 species: Archae - 0; Bacteria - 196; Metazoa - 419; Fungi - 362; Plants - 144; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5103eggNOG:KOG1831EMBL:CP002684EnsemblPlants:AT1G02080
EnsemblPlants:AT1G02080.1entrez:839244ExpressionAtlas:F4HVV6GeneID:839244
Gramene:AT1G02080.1hmmpanther:PTHR13162hmmpanther:PTHR13162:SF8InParanoid:F4HVV6
InterPro:IPR007196InterPro:IPR024557InterPro:IPR032191InterPro:IPR032193
InterPro:IPR032194OMA:PNVFANDPaxDb:F4HVV6Pfam:PF04054
Pfam:PF12842Pfam:PF16415Pfam:PF16417Pfam:PF16418
PRIDE:F4HVV6ProteinModelPortal:F4HVV6Proteomes:UP000006548RefSeq:NP_171710.4
STRING:3702.AT1G02080.1TAIR:AT1G02080UniGene:At.23055UniProt:F4HVV6
Coordinates (TAIR10) chr1:+:373335..386682
Molecular Weight (calculated) 269902.00 Da
IEP (calculated) 5.34
GRAVY (calculated) -0.10
Length 2431 amino acids
Sequence (TAIR10)
(BLAST)
0001: MYSKTIENPD ETSPRIMWAL KRVSYSRGST ENPRRKSPSP VVPGISDLGF PYLMTPSKVA GHTRFLLHSF HDSDVDSIAL QLSQFVDFGV ETSIPVLKTC
0101: LDCFTARRSH PNSLQLEKVV SLLFKHVLKL SNLATLLPHA LNDFELTQES VDDLTTTLNF SISENIGFAL ALTDFERLDA KTTGRNLLLA QIEQLCANTG
0201: QILSSELIHS VLSFLRKSED LSMHLDSFLQ FLSSAQPRDD FSFALTPMLA QQVHEAPVFR SMDFHTDSAD NDLDAILAEI DKEVSVGDLM GELGCGFTAD
0301: AQQCKEILSS FAPLGEATIS RIVGNVSRTC ADLEDNQTTF STFTVALGSC IPTELPTPRS WNVDILVDTI KQLQAPGISW RKVIENLDHD GFDIPNMESF
0401: SFFMRIYKAA CKEPFPLDAV CGSVWKNMDG QLSFLKHAIS APPEVFTFMH SPRKLVYIDN MHSQEQQLGL SNHAWLSLDL LDVLCQLAER GHAVLVSSLL
0501: QYPLTQCPRT LLLGMTHIKT AYNLIQREVV SAILPVIITS PQDSGFIHNL WHQNAELVLW GIIDAQHLKA DSMLRIIEIC HELKILSVVL ESVPVSSSIR
0601: LAVLASLRGL LDIENWLPNC LYMYKDLFAE ECLKFVKNVH FSESDDFRAK IFHPSDPLSD LHLEATTSLL KVLKAHDNAI TSSQLVEEIE KVNAAILDCN
0701: PKLQNGEAKD SSAPNAYGDD VEAEANAYFH QMFSSHLSVD AMVQMLSRYK ESLVPREKLI FECMIANLFE EYRFFPKYPE RQLKIASILF GSVIKHQLIS
0801: SLTLGMALRL VLDSLRKPAD SKMFLFGSKA LEQFVNRLVE LPQYCNHILQ ISHLRSTHPE LVTVIEQALS RISSGNLESD ASVSHPGPSQ SFPGNGELSG
0901: SGIGQPALQL SSPLQLQQKN EVPSVPSNEA KPLLPSLSTT SVDVSVNPKN PGIPTSSSTS TGFVRPARAT TSTRFGSALN IETLVAAAER RENAIEAPPS
1001: DVQDKVSFII NNISTTNIES KGKEFAEILP QQYYPWFAQY MVMKRASIEP NFHDLYLKFL DKVDSKLLFK EILQNTYENC KVLLGSELIK SSSEERSLLK
1101: NLGSWLGRLT IGRNYVLRAR EIDPKSLIVE AYEKGLMIAV IPFTSKVLEP CQNSIAYQPP NPWTMAILGL LAEIYSMPNL KMNLKFDIEV LFKNLGVEMK
1201: EVVPTSLLKD RKREIDGNPD FSNKDPGVTQ ISQPQMIPEP KTISPLKQID LPLDVANSPN TDVPSKLLSQ YVAPQRVYTN TLMDEEKVAT LGLPEQLPSP
1301: QGLFQSTPSP LFSISQLSAA LPNIGNHVVI NQKLSAFGMH FPFQRVVPLA MDRAIKEIVS GIVQRSVCIA CQTTKELVLK DYALEPDESR IYNAAHLMVA
1401: SLAGSLAHVT CKEPLRTSIS GHLRNSLQGL NISNDALEQI VQLVTNDNLD LGCAAIEQAA TEKAIQTIDA DIAQQLLLRR KHRDGAGSSF FDPNILSQNS
1501: VSFIPESLRP KPGHLSLSQQ RVYEDFVQHP WQKQSTQTSH GLSAASSSSG DVALGSGYGP VSGKVASEFL SNAGNARMDM VSRPSDISVD GFESSPVSLL
1601: SSQVDPAGDS SSLQFTKSLP TSELNLAESS DAATKETGTS LQTLTSAATM ERLGASNITQ PSLSTRDALD KCQIVTQKME ELVANNAGDD EIQAVISEVP
1701: EIILRCISRD EAAFAVAQKA FKALYENASS NLHVSANLAI LVAIRDVCKR VVKELTSWVI YSEEDRKLNK DITIGLIQRE LLSLAEYNVH MAKHLDGGRN
1801: KTATDFAISL LQSLVTEESS VISELHSLVD ALAKLASKSG SSESLQQLID IIRNPVTNTA GLSDSSTGND NNDRQKDEKV ACNTTNTEES TSLDYVESDP
1901: AGFQNRVSTL FKNWYQICEL PGANETACSQ YVLHLHQTGL LKGDDTTESF FRILLELSVA HCISSEDINS GAVQSPQQPQ SPSFLIIDMY AKLVFSILKY
2001: FPEQESSSRL FLLSEIMADT VRFIQKDAED KKTSLNSKPY FRLFINWLLD LCSLDPGTDG ANFQVLTAFA NAFHALQPLK IPAFSFAWLE LVSHRSFMPK
2101: LLTVNGQKGW PYVQRLLVDL LQFLEPFLRN AELGGPVHFL YKGTLRVLLV LLHDFPEFLC DYHFTFCDVI PSSCIQMRNI ILSSFPRNMR LPDPSTPNLK
2201: IDLLPEIVEA PCILSEVDAA LKAKQMKNDV DEYLTSRQQN STFLSELKTK LLLSSSEASS AGTRYSVPLI NSLVLYTGMQ AIQQLQAGET QAQNVVALQM
2301: FKYLSMELDT EGRYLFLNAI ANQLRYPNNH THYFSFIMLY LFFESDQEII QEQITRVLLE RLIVNRPHPW GLLITFIELI KNPRYSFWKQ AFIRCAPEIE
2401: KLFESVARSC GGLKPVDEGM VSGGWVSDNS H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)