AT3G02260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : auxin transport protein (BIG) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Calossin-like protein required for polar auxin transport | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BIG (BIG); FUNCTIONS IN: ubiquitin-protein ligase activity, binding, zinc ion binding; INVOLVED IN: response to auxin stimulus, indeterminate inflorescence morphogenesis, photomorphogenesis, root development, auxin polar transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Armadillo-type fold (InterPro:IPR016024), Zinc finger, ZZ-type (InterPro:IPR000433), Zinc finger, N-recognin (InterPro:IPR003126); Has 1182 Blast hits to 997 proteins in 123 species: Archae - 0; Bacteria - 4; Metazoa - 768; Fungi - 44; Plants - 189; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:431152..448489 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 567920.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.78 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 5098 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MADDLANLCR FLFDDTAFPS LSSSASSDLF SRRLRSDDSI KRGLRSFYLL LRWGVAPIGG DDADSSGKLR FETWSDSQLQ ALVSISQAIL LLSRSLLGTD 0101: LTLNQGLVDQ LEPIVLGVIQ EVMEFSLSFL EKSSFRQNDL KMEINMEILL EIASFDGSEK QYDILPDFSP AEVAELWPAF SGEHDNMDAQ SLVKCTFQGG 0201: RCSNEEKPVD RLLITLMSEC IESDVQAQSV VKSPFQQDCG DLNPFTRHLA VVHLRCVCRL IMVCKELVQL PNMLDEKTVD QAVLDKLSFC LRILKLLGSL 0301: SKDVQSIEND GSLLQAVASF TDAFPKLFRV FFEFTNHTAT EGNIESLSLA LVEGFLNLVQ LIFGKSSVFQ NVQACVAASI VSNLDSSVWR YDGSSCNLTP 0401: PLAYFPRSVI YTLKLIQDLK RQPYHIHDLR VLESEVTYED VSSTVDSVYF HLRQEKIPLL KCFTVEDIMR VIFPSSSQWM DNFFHLVYFL HREGVKLRPK 0501: VERTYSSLRS NSFAEVESQI SHDDEALFGN LFSEGSRSLC SIEPNDQPPV SVSSNLLLQA AKELLNFLRA CILCQEWVPS IYEDGCKKLD TGHIDILLNI 0601: VGCSIEDKAS DGGCMLQDEG RPGHVAFELL LNLLRSRALS DFLESYLFQQ ILVVENSDFN YNDKTLALLA HTLLCRPGLA GAQLRAKIYD GFVSFVTERA 0701: RGICAEALSL KELTACLPSA FHIEILLMAF HLSNEAEKAK FSNLIASCLH KVDTPAGICD GPQLSSWAML ISRLLVLLHH MLLHPNTCPT SLMLDLRSKL 0801: REVRSCGSNL HVTVGDHLSS WASLVARGIT DSWAEDESVS HLMSQMIDFS PHPPTFQNDV STAKTLNLDY GDLSASLCRV LGLWKGKKAG KVEDLLVERY 0901: IFMLSSDIAR INCALDSQPS LHVNYQNVDI SNSVDLISTS HLLVGDINVV GRNIELRNIL IGVLNQLQAA PEQVVEDLGW DYIREGAWLS LLLYFLDGGV 1001: WDYCNKNSCS EIDPFWKECT SVDAKYVAAA EGVVSYLMKT GDIAELLRML SSLVGKYLRV YKKAFLATFS DWNHHGHSSP SLLLLKHTQF GKSLQGEYAK 1101: IGDNSLHLQC IFYLSKLDSL GDGRGSGVLW KVFWEFMVHG FPTSLQTSSA ILLSCILSIR CIVLTINGLL KLGNSKEKFG VDTSVLHQLL DSIMIIKFDQ 1201: VFESFHGKCE EIHQNICAVL QLPDLTELFL MKDMEGFVRD ISAEQIDRSQ VLEGVITKIV DVMDSLSKDS SKSDIFKFYL GVDAVSEHTR EFYELQRGDL 1301: SVFIDSLDYC SLEPVNIKVL NFLVDLLSVA QSPDLRRRVQ QKFIDMDLIS LSGWLERRLL GSFVEEIDGK KTAKGNSLPF REAAMNFINC LVSSTNDLQT 1401: RELQNHLFEA LLISLDTAFL SFDIHMSMSY FHFVLQLARE DNLMKMVLKR TIMLMEKLAA EEKLLPGLKF IFGVIGTLLS NRSPSHGESL CGKSLASYKN 1501: TATGPLVPKL SGTTKKSDTL ALPVDQEGSS ISLECDVTSV DEDEDDGTSD GEVASLDKED EEDANSERYL ASKVCTFTSS GSNFMEQHWY FCYTCDLTVS 1601: KGCCSVCAKV CHRGHRVVYS RSSRFFCDCG AGGVRGSSCQ CLKPRKYNGN GSAPARGTNN FQSFLPLSED ADQLGESDSD VEEDGFGEEN HVVLYIPKET 1701: QYKMSLLLEE LGIEDRVLEL FSSLLPSITS KRDSGLSKEK QVNLGKDKVL SFDTDLLQLK KAYKSGSLDL KIKADYTNSK DLKSLLANGS LVKSLLSVSV 1801: RGRLAVGEGD KVAIFDVGQL IGQATIAPIN ADKANVKPLS RNIVRFEIVH LSFNPVVENY LAVAGLEDCQ ILTLNHRGEV IDRLAVELAL QGAFIRRIDW 1901: VPGSQVQLMV VTNKFVKIYD LSQDSISPTQ YFTLPNDMIV DATLFVASRG RVFLLVLSEQ GNLYRFELSW GGNAGATPLK EIVQIMGKDV TGKGSSVYFS 2001: PTYRLLFISY HDGSSFMGRL SSDATSLTDT SGMFEEESDC KQRVAGLHRW KELLAGSGLF ICFSSVKSNA VLAVSLRGDG VCAQNLRHPT GSSSPMVGIT 2101: AYKPLSKDNV HCLVLHDDGS LQIYSHVRSG VDTDSNFTAE KVKKLGSKIL NNKTYAGAKP EFPLDFFERA FCITADVRLG SDAIRNGDSE GAKQSLASED 2201: GFIESPSPVG FKISVSNPNP DIVMVGIRMH VGTTSASSIP SEVTIFQRSI KMDEGMRCWY DIPFTVAESL LADEDVVISV GPTTSGTALP RIDSLEVYGR 2301: AKDEFGWKEK MDAVLDMEAR VLGHGLLLPG SSKKRALAQS ASMEEQVIAD GLKLLSIYYS VCRPRQEVVL SELKCKQLLE TIFESDRETL LQTTACRVLQ 2401: SVFPRKEIYY QVMFLPNSVK DTMRLLGVVK VTSILSSRLG ILGTGGSIVE EFNAQMRAVS KVALTRKSNF SVFLEMNGSE VVDNLMQVLW GILESEPLDT 2501: PTMNNVVMSS VELIYSYAEC LASQGKDTGV HSVAPAVQLL KALMLFPNES VQTSSRCVLV LAISSRLLQV PFPKQTMLTT DDLVDNVTTP SVPIRTAGGN 2601: THVMIEEDSI TSSVQYCCDG CSTVPILRRR WHCTVCPDFD LCEACYEVLD ADRLPPPHTR DHPMTAIPIE VESLGADTNE IQFSADEVGI SNMLPVVTSS 2701: IPQASTPSIH VLEPGESAEF SASLTDPISI SASKRAVNSL ILSEFLQELS GWMETVSGVQ AIPVMQLFYR LSSAIGGAFM DSSKPEEISL DKLIKWLLGE 2801: INLSKPFAAS TRSSLGEIVI LVFMFFTLML RSWHQPGSDG SSSKLGGSTD VHDRRIVQSS TVVATQSSLH VQERDDFASQ LVRACSCLRN QEFVNYLMNI 2901: LQQLVHVFKS RAANVEARGS SSGSGCGAML TVRRDLPAGN YSPFFSDSYA KAHRADIFVD YHRLLLENVF RLVYTLVRPE KQEKMGEKEK VYRNASSKDL 3001: KLDGFQDVLC SYINNPHTAF VRRYARRLFL HLCGSKTQYY SVRDSWQFSN EVKNLYKHVE KSGGFENNVS YERSVKIVKS LSTIAEVAVA RPRNWQKYCL 3101: RHGDFLSFLL NGVFHFAEES VIQTLKLLNL AFYQGKDVSS SVQKAEATEV VTGSNRSGSQ SVDSKKKKKG EDGHDSGLEK LYVDMEGVVD IFSANCGDLL 3201: RQFIDFFLLE WNSSSVRTEA KSVIYGLWHH GRHSFKESLL AALLQKVRYL PAYGQNIVEY TELVSLLLDK APENNSKQAI NELVDRCLNP DVIRCFFETL 3301: HSQNELIANH PNSRIYSTLG NLVEFDGYYL ESEPCVACSS PDVPYSKMKL ESLKSETKFT DNRIIVKCTG SYTIQSVTMN VHDARKSKSV KVLNLYYNNR 3401: PVSDLSELKN NWSLWKRAKS CHLSFNQTEL KVEFPIPITA CNFMIELDSF YENLQALSLE PLQCPRCSRP VTDKHGICSN CHENAYQCRQ CRNINYENLD 3501: SFLCNECGYS KYGRFEFNFM AKPSFIFDNM ENDEDMKKGL AAIESESENA HKRYQQLLGF KKPLLKIVSS IGETEMDSQH KDTVQQMMAS LPGPSCKINR 3601: KIALLGVLYG EKCKAAFDSV SKSVQTLQGL RRVLMSYLHQ KNSNFSSGAS RCVVSKTPNN CYGCATTFVT QCLEILQVLS KHPRSRKQLV AAGILSELFE 3701: NNIHQGPKTA RAQARAALST FSEGDLSAVN ELNNLVQKKI MYCLEHHRSM DIALATREEM LLLSEVCSLT DEFWESRLRL VFQLLFSSIK LGAKHPAISE 3801: HIILPCLKII SVACTPPKPD TAEKEQTMGK SAPAVQEKDE NAAGVIKYSS ESEENNLNVS QKTRDIQLVS YLEWEKGASY LDFVRRQYKA SQSIRGASQK 3901: SRTHRSDFLA LKYTLRWKRR SSRTSKGGLQ AFELGSWVTE LILSACSQSI RSEMCTLISL LAAQSSPRRY RLINLLIGLL PATLAAGESS AEYFELLFKM 4001: IETQDALLFL TVRGCLTTIC KLISQEVGNI ESLERSLQID ISQGFTLHKL LELLGKFLEV PNIRSRFMRD NLLSHVLEAL IVIRGLIVQK TKLINDCNRR 4101: LKDLLDGLLL ESSENKRQFI RACVSGLQTH AEENKGRTCL FILEQLCNLI CPSKPEAVYM LILNKSHTQE EFIRGSMTKN PYSSAEIGPL MRDVKNKICQ 4201: QLDLLGLLED DYGMELLVAG NIISLDLSIA QVYELVWKKS NQSSTSLTNS ALLASNAAPS RDCPPMTVTY RLQGLDGEAT EPMIKELEED REESQDPEIE 4301: FAIAGAVREY GGLEILLDMI KSLQDDFKSN QEEMVAVLDL LNHCCKIREN RRALLRLGAL SLLLETARRA FSVDAMEPAE GILLIVESLT LEANESDSIS 4401: AAQSALTVSN EETGTWEQAK KIVLMFLERL SHPSGLKKSN KQQRNTEMVA RILPYLTYGE PAAMEALIEH FSPYLQNWSE FDQLQQRHEE DPKDDSIAQQ 4501: AAKQRFTVEN FVRVSESLKT SSCGERLKDI VLENGIIAVA VKHIKEIFAI TGQTGFKSSK EWLLALKLPS VPLILSMLRG LSMGHLPTQT CIDEGGILTL 4601: LHALEGVSGE NDIGARAENL LDTLADKEGK GDGFLGEKVR ALRDATKDEM RRRALRKREE LLQGLGMRQE LSSDGGERIV VSQPILEGFE DVEEEEDGLA 4701: CMVCREGYKL RPSDLLGVYS YSKRVNLGVG NSGSARGECV YTTVSYFNII HFQCHQEAKR ADAALKNPKK EWEGAMLRNN ESLCNSLFPV KGPSVPLAQY 4801: LRYVDQYWDN LNALGRADGS RLRLLTYDIV LMLARFATGA SFSADCRGGG RDSNSRFLPF MFQMARHLLD QGGPVQRTNM ARSVSSYISS SSTSTATAPS 4901: SDSRPLTPGS QLSSTGTEET VQFMMVNSLL SESYESWLQH RRVFLQRGIY HTFMQHAHGR VASRAAEPTS SGGKTQDAET LTGDELLSIV KPMLVYTGMI 5001: EQLQQLFKPK KPVHIEPIKK EGTSSGVELE PWEIVMKEKL LNVKEMIGFS KELISWLDEI NSATDLQEAF DIVGVLADVL SEGVTQCDQF VRSAIDKD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)