AT1G03060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Beige/BEACH domain ;WD domain, G-beta repeat protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a WD/BEACH domain protein involved in cell morphogenesis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SPIRRIG (SPI); FUNCTIONS IN: binding; INVOLVED IN: signal transduction, multidimensional cell growth, vacuole organization, trichome morphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Beige/BEACH (InterPro:IPR000409), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Beige/BEACH domain ;WD domain, G-beta repeat protein (TAIR:AT4G02660.1); Has 8491 Blast hits to 6383 proteins in 382 species: Archae - 4; Bacteria - 1376; Metazoa - 3669; Fungi - 1335; Plants - 868; Viruses - 0; Other Eukaryotes - 1239 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:712971..726891 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 400916.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 3601 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKWATLLKDI KEKVGLAQSS DSDPFPVDLT APPSSSSSSS SPSFTYPSSS SLHHFNFSPS SRDNHELELD FKRLWEEFRS SSSEKEKEAA LNLTVDIFCR 0101: LVKRHANVDQ LVTMLVETHI FSFVIGRAFV TDIEKLKIGS KTRSLNVEKV LRFFSDVTKE GFSPGANLLT AVEVLVSGPI DKQSLLDSGI FCCLIHVLIA 0201: LLAYDELSKS KITGDLEVVS AEKDAGYIVL QTRRLEVEGS VVHIMKALAS NPSAAQSLIE DDSLESLFNM VANGSITVFS QYKEGLVPLH NIQLHRHAMQ 0301: ILGLLLVNDN GSTARYIRKH HLIKVLLMAV KEFDPSCGDS AYTMGIVDLL LECVELSYRP EAGGVRLRED IRNAHGYHFL VQFALVLSSL PKNPIFVSSN 0401: HDSGSDDPEV FHDGENTNST ENADFSSQNF APSLSRLLDV LVTLAQTGPA EPSVGRASRS SQTKPTGHSR SRTSSVDSIY DETWEQGSGK VKDLEAVQML 0501: QDIFLKAENK DLQAEVLNRM FKIFSSHVEN YRLCQELRTV PLLVLNMAGF PSSLQDIILK ILEYAVTVVN CVPEQELLSL CCLLQQPITS QLKHTILSFF 0601: VKLISFDQQY KKVLREVGVL EVLQDDLKQH KLLIGPDQYS GVSSHSDRKP SSGSFRKNLD TKDAIISSPK LMESGSGKLP VFEVDNTITV GWDCLISLLK 0701: KAEANQSSFR AANGVAIILP FLISDAHRSG VLRILSCLIT EDTKQVHHDE LGAVVDLLKS GMVTGISGHQ YKLHDDAKCD TMGALWRIVG VNGSAQRVFG 0801: EATGFSLLLT TLHTFQGKRE HMDESDLTVY IKLFKYLFRL MTAAVCENAV NRMKLHAVIT SQTFFELLAE SGLLCVELER QVIQLLLELA LEVVVPPFLT 0901: SESTALATIP ENENTTFVVT TPSGQFNPDK ERIYNAGAVR VLIRSLLLFS PKMQLEFLRL LESLARASPF NQENLTSIGC VELLLEIIYP FLAGSSPFLS 1001: YALKIVEILG AYRLSPSELR MLFRYVLQMR IMNSGHAIVG MMEKLILMED TALEHLSLAP FVELDMSKTG HASVQVSLGE RSWPPAAGYS FVCWFQFRNF 1101: LTTQGKESEA SKAGGSSKTR MTSAQQHEQN IFRMFSVGAV SNESPFYAEL YFQEDGILTL ATSNSHSLSF SGLEIEEGRW HHLAVVHSKP NALAGLFQAS 1201: VAYVYLDGKL RHTGKLGYSP SPVGKSLQVT VGTPATCARV SDLTWKTRSC YLFEEVLTSG CIGFMYILGR GYKGLFQDAD LLRFVPNQAC GGGSMAILDS 1301: LDTDMTSSSN GQKFDGSNRQ GDSKADGSGI VWDLERLGNL AFQLPGKKLI FAFDGTCSEF IRASGNFSLL NLVDPLSAAA SPIGGIPRFG RLVGNVSICR 1401: QSVIGDTIRP VGGMTVVLAL VEAAESRNML HMALSLLACA LHQNPQNVKD MQTIRGYHLL ALFLRPKMTL FDMQSLEIFF QIAACEALFS EPKKLESVQS 1501: NITMPPTETI FENSYEDLSL SRFRYDSSSV GSHGDMDDFS VPKDSFSHLS ELETDIPVET SNCIVLSNAD MVEHVLLDWT LWVTSPVSIQ IALLGFLENL 1601: VSMHWYRNHN LTILRRINLV EHLLVTLQRG DVEVPVLEKL VVLLGCILED GFLTSELENV VRFVIMTFNP PEVKSRSSLL RESMGKHVIV RNMLLEMLID 1701: LQVTIKAEDL LELWHKIVSS KLITYFLDEA VHPTSMRWIM TLLGVCLASS PNFSLKFRTS GGYQGLLRVL QNFYDSPDIY YILFCLIFGK PVYPRLPEVR 1801: MLDFHALVPN DGSYVELKFI ELLDSVVAMA KSTYDRLIMQ SMLAHQSGNL SQVSASLVAE LIEGAEMTGE LQGEALMHKT YAARLMGGEA SAPAAATSVL 1901: RFMVDLAKMC PQFSTACRRA EFVENCADLY FSCVRAAYAV KMAKQLSVKA EEKHINDADD SGSQGSLPHD QDQSTKTSIS VGSFPQGQVS LGSEDMSLPA 2001: NYVVNDKMEN ILPPPTQDTS KSLQGVEDVK KQDDHHVGPS ASSERDFQDF TGNPVQVQAT DSQSSASFPM IESPLLSEKS SLKVSFTPSP SPVVALASWL 2101: GSNYNESKSS TLGSPSLESY VSVNEVDASS ERKSGSQGSS AANAFFTVSP KLLLETDETG YGGGPCSAGA SAVLDFMAEA LADLVTEQIK AVPVLESILE 2201: MVPFYVDPES VLVFQGLCLS RVMNYLERRL LRDDEEDEKK LDKAKWSVNL DAFCWMIVDR VYMGAFSQPA GVLRALEFLL SMLQLANKDG RVEEVTPSGK 2301: GLLSLGRATR QLDAYVHSIL KNTNRMVLYC FLPSFLITIG EEDLLSQLGL LVESKKRPSP NPATDESGID ISTVLQLLVA NRRIIFCPSN LDTDLNCCLC 2401: VNLISLLLDQ RKSVQNMSLD IVKYLLVHRR SALEDLLVTK PNQGQNFDVL HGGFDKLLTG NLPEFFKWLE SSDKIINKVL EQCAAIMWVQ YIAGSAKFPG 2501: VRIKGMEGRR KREMGRKSRD MSKLDLKHWD QLNERRYALE VLRDAMSTEL RVVRQNKYGW ILHAESEWQT HLQQLVHERG IFPMRKSKGT EDPEWQLCPI 2601: EGPYRMRKKL ERCKLKIDSI QNVLDGKLEL GEIELPKVKN EDGPVISDTD SEPPFLLSEL YDESFLKESD DFKDVASARN GWNDDRASST NEASLHSALD 2701: FGGKSSIASV PITDTTHVKS ETGSPRHSSS AKMDETNGRE EKSEKELNDD GEYLIRPYLE HLEKIRFRYN CERVVDLDKH DGIFLIGEFC LYVIENFYID 2801: EDGCICEKEC EDELSVIDQA LGVKKDVSGS SDFHSKSSTS WTTTVKTGAV GGRAWAYGGG AWGKEKMCMT GNLPHPWRMW KLNNVHEILK RDYQLRPVAI 2901: EIFSMDGCND LLVFHKKERE EVFKNLVAMN LPRNSMLDTT ISGSAKQESN EGGRLFKLMA KSFSKRWQNG EISNFQYLMH LNTLAGRGYS DLTQYPVFPW 3001: VLADYDSESL DFSDPKTFRK LHKPMGCQTP EGEEEFRKRY ESWDDPEVPK FHYGSHYSSA GIVLFYLIRL PPFSSENQKL QGGQFDHADR LFNSIKDTWL 3101: SAAGKGNTSD VKELIPEFFY MPEFLENRFS LDLGEKQSGE KVGDVFLPPW ARGSVREFIL KHREALESDY VSENLHHWID LIFGYKQRGK AAEEAVNVFY 3201: HYTYEGNVDI DAVTDPAMKA SILAQINHFG QTPKQLFPKA HVKRRTDRKI PLHPLKHSMH LVPHEIRKCS SSISQIITFH DKVLVAGANC FLKPRGYTKY 3301: ITWGFPDRSL RFMSYDQDKL LSTHENLHES NQIQCAGVSH DGRIVVTGAE DGLVCVWRVS KDGPRGSRRL RLEKALCAHT AKVTCLRVSQ PYMMIASGSD 3401: DCTVIIWDLS SLSFVRQLPD FPVPISAIYI NDLTGEIVTA AGTVLAVWSI NGDCLAVANT SQLPSDSVLS VTGSTSSDWL ETSWYVTGHQ SGAVKVWRMI 3501: HCTDPVSAES KTSSSNRTGG LNLGDQVPEY KLILHKVLKF HKQPVTALHL TSDLKQLLSG DSAGQLLSWT VPDETLRASM KQASLKQASL KQASLKQASS 3601: V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)