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AT3G55190.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: glycerol biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G39420.1); Has 3264 Blast hits to 3262 proteins in 1077 species: Archae - 36; Bacteria - 2164; Metazoa - 108; Fungi - 125; Plants - 448; Viruses - 35; Other Eukaryotes - 348 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-389-MONOMEReggNOG:COG2267eggNOG:KOG1455EMBL:AL132954
EMBL:CP002686EMBL:DQ056625EnsemblPlants:AT3G55190EnsemblPlants:AT3G55190.1
entrez:824685ESTHER:arath-T26I12.70Gene3D:3.40.50.1820GeneID:824685
Gramene:AT3G55190.1hmmpanther:PTHR11614hmmpanther:PTHR11614:SF92HOGENOM:HOG000003228
IntAct:Q9M3D0InterPro:IPR022742InterPro:IPR029058KEGG:ath:AT3G55190
OMA:FNDIVQWPfam:PF12146PhylomeDB:Q9M3D0PIR:T47658
Proteomes:UP000006548Reactome:R-ATH-1482883Reactome:R-ATH-426048RefSeq:NP_191079.1
SMR:Q9M3D0STRING:3702.AT3G55190.1SUPFAM:SSF53474TAIR:AT3G55190
UniGene:At.53936UniProt:Q9M3D0
Coordinates (TAIR10) chr3:+:20458007..20459890
Molecular Weight (calculated) 36233.80 Da
IEP (calculated) 6.44
GRAVY (calculated) -0.26
Length 319 amino acids
Sequence (TAIR10)
(BLAST)
001: MAHVDGQVGY SEEFIENSRG MQLLTCKWFP VNQEPRALIF FCHGYAIDCS TTFKDIAPKF AKEGFAVHGI EYEGHGRSSG LSVYIDNFDL LIDDVSSHFS
101: KISEMGDNTK KKRFLMGESM GGAVVLLLHR KKPEFWDGGI LIAPMCKIAE EMKPSRMVIS MINMVTNLIP SWKSIIHGPD ILNSAIKLPE KRHEIRTNPN
201: CYNGWPRMKT MSELFRISLD LENRLNEVTM PFIVLHGEDD KVTDKGGSKL LYEVALSNDK TLKLYPEMWH SLLFGEPPEN SEIVFNDIVQ WMQTRITTLQ
301: VKANNHEAKT SNLITSDSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)