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AT5G60790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:22550958 (2012): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ABC transporter family protein
Curator
Summary (TAIR10)
member of GCN subfamily
Computational
Description (TAIR10)
GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:21444eggNOG:COG0488eggNOG:KOG0927EMBL:AB015472
EMBL:AK317570EMBL:AK317690EMBL:AY140066EMBL:BT000946
EMBL:BT008363EMBL:CP002688EnsemblPlants:AT5G60790EnsemblPlants:AT5G60790.1
entrez:836200Gene3D:3.40.50.300GeneID:836200Genevisible:Q9FJH6
GO:GO:0005215GO:GO:0005524GO:GO:0005886GO:GO:0016887
Gramene:AT5G60790.1hmmpanther:PTHR19211hmmpanther:PTHR19211:SF52HOGENOM:HOG000271637
InParanoid:Q9FJH6IntAct:Q9FJH6InterPro:IPR003439InterPro:IPR003593
InterPro:IPR017871InterPro:IPR027417InterPro:IPR032781KEGG:ath:AT5G60790
KO:K06185OMA:SHIDWLVPaxDb:Q9FJH6Pfam:PF00005
Pfam:PF12848Pfam:Q9FJH6Pfscan:PS50893PhylomeDB:Q9FJH6
PRIDE:Q9FJH6PRO:PR:Q9FJH6PROSITE:PS00211PROSITE:PS50893
ProteinModelPortal:Q9FJH6Proteomes:UP000006548RefSeq:NP_200887.1scanprosite:PS00211
SMART:SM00382SMR:Q9FJH6STRING:3702.AT5G60790.1SUPFAM:SSF52540
TAIR:AT5G60790tair10-symbols:ATGCN1tair10-symbols:GCN1UniGene:At.9321
UniProt:Q9FJH6
Coordinates (TAIR10) chr5:-:24453760..24455767
Molecular Weight (calculated) 66889.40 Da
IEP (calculated) 6.43
GRAVY (calculated) -0.34
Length 595 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSDASKKKA AQKKAAAAAK RGGKAAAPSK SAATSSNGVD SLSSGVDALQ ISDRTCTGVL CSHPQSRDIR IESLSVTFHG YDLIVDSMLE LNYGRRYGLL
101: GLNGCGKSTL LTAIGRREIP IPDQMDIYHL SHEIEATDMS SLEAVVSCDE ERLRLEKEVE ILVQQDDGGG ERLQSIYERL DAMDAETAEK RAAEILFGLG
201: FDKEMQAKKT KDFSGGWRMR IALARALFIM PTILLLDEPT NHLDLEACVW LEESLKNFDR ILVVVSHSQD FLNGVCTNII HMQSKQLKYY TGNFDQYCQT
301: RSELEENQMK QYRWEQEQIS HMKEYIARFG HGSAKLARQA QSKEKTLAKM ERGGLTEKVA RDSVLVFRFA DVGKLPPPVL QFVEVSFGYT PDYLIYKNID
401: FGVDLDSRVA LVGPNGAGKS TLLKLMTGEL HPTEGMVRRH NHLKIAQYHQ HLAEKLDLEL PALLYMMREF PGTEEEKMRA AIGRFGLTGK AQVMPMKNLS
501: DGQRSRVIFA WLAYKQPNML LLDEPTNHLD IETIDSLAEA LNEWDGGLVL VSHDFRLINQ VAHEIWVCEK QCITKWNGDI MDFKRHLKAK AGLED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)