AT2G26890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAJ heat shock N-terminal domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GRAVITROPISM DEFECTIVE 2 (GRV2); FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: in 10 processes; LOCATED IN: in 6 components; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11462327..11473841 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 279089.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2554 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDSVSRGAVA STTGGAVEEP EYLARYLVVK HSWRGRYKRI LCISSGGIVT LDPNTLAVTN SYDTGSNFDG ASPLVGRDEN TESVGGEFTV NVRTDGKGKF 0101: KAMKFSSRCR ASILTELYRL RWNQIRPVAE FQVLHLRRRN AEWVPYKLKI TFVGLELVDS KSGNSRWILD FRDMGSPAII LLSDAYRTKS ADSAGFVLCP 0201: MYGRKSKAFR AAPGTTNSSI VASLAKTAKS MVGVFLSVDD SQLLTVSEYM TRRAKEAVGA EETPNGWWSV TRLRSAAHGT LNMPGLSLAI GPKGGLGEHG 0301: DAVALQLILT KASLVERRID NYEVVIVRPL SSVSSLVRFA EEPQMFAIEF SDGCPVLVYA SISRDNLLAA ILDTLQTEGH CPIPVLPRLT MPGHRIDPPC 0401: GRVSLISGPQ HLVADLETCS LHLKHLAAAA KDAVAEGGSV PGCRARLWRR IREFNACIPY TGVPANSEVP EVTLMALITM LPSTPNLPVD APPLPPPSPK 0501: AAATVIGFVT CLRRLLSSRS AASHIMSFPA AVNRIMGLLR NGSEGVAAEA AGLIASLIGG WSADLSTAPD SRGEKHATIM HTKSVLFAQQ GYVTILVNRL 0601: KPMSVSPLFS MAIVEVFEAM VCDPHGETTQ YTVFVELLRQ IAALRRRLFA LFAHPAESVR ETIAVIMRTI AEEDAIAAES MRDAALRDGA LLRHLLNAFS 0701: LPASERREVS RQLVALWADS YQPALDLLSR VLPPGLVAYL HTRPDDVVDD TDQEGSSTNR RQKRLLQQRR GRIAKGMGAQ DIPLPPGNNV EAGDAAKHMS 0801: ANASVPDNFQ RRAADSSSEA SNPQASAFPG VDSTIAGVSQ NGYPAFASVT TNANGHEQPE TNASDVVGSD PNLYGIQNSV LPAPAQVIVE STAVGSGKLL 0901: LNWREFWRAF GLDHNRADLI WNERTRQELI EALKAEVHNL DVEKERTEDI SPGDVEATTG QEIIPRISWN YSEFSVSYRS LSKEVCVGQY YLRLLLESGN 1001: AGKAQDFPLR DPVAFFRALY HRFQCDADMG LTIDGAVPDE LGSSGDWCDM SRLDGFGGGG GASVRELCAR AMAIVYEQHY NTIGPFEGTA HITALIDRTN 1101: DRALRHRLLL LLKALVKVLL NVEGCVVVGG CVLAVDLLTV VHENSERTPI PLQSNLIAAT AFMEPPKEWM YIDKGGAEVG PVEKDVIRSL WSKKDIDWTT 1201: KCRALGMSDW KKLRDIRELR WAVAVRVPVL TPSQVGDAAL SILHSMVSAH SDLDDAGEIV TPTPRVKRIL SSTRCLPHIA QALLSGEPVI VEAGAALLKD 1301: VVTRNSKAMI RLYSTGAFYF ALAYPGSNLY SIAQLFSVTH VHQAFHGGEE ATVSSSLPLA KRSVLGGLLP ESLLYVLERS GPAAFAAGMV SDSDTPEIIW 1401: THKMRAENLI CQVLQHLGDY PQKLSQHCHS LYDYAPMPPV TYPELRDEMW CHRYYLRNLC DEIQFPNWPI VEHVEFLQSL LVMWREELTR KPMDLSEGEA 1501: CKILEISLNN VSSDDLNRTA SVELNEEISN ISKQIQNLDE EKLKRQYRKL AMRYHPDKNP EGREKFLAVQ KAYECLQATM QGLQGPQPWR LLLLLKAQCI 1601: LYRRYGHVLR PFKYAGYPML LDAVTVDKDD NNFLSNDRSP LLVAASELVS LTCAASSLNG EELVRDGGVQ LLSTLLSRCM CVVQPTTSQH EPAAIIVTNV 1701: MRTLSVISQF ESARAGFLEL PSLIEDIVHC TELERVPAAV DAALQSIAKV SVFPELQHGL LKAGALWYIL PLLLQYDSTA EESNSVESHG VGVSIQIAKN 1801: EHALQASQAL SRLTGLCADE SLTPYNATAA DVLKALLTPK LASLLKDEVA KDLLSKLNTN LETPEIIWNS ATRSELLNFV DEQRACQCPD GSYDLKNAQS 1901: FSYDALSKEV FVGNVYLKVY NDQPDSEISE PESFCNALID FISSLVHTEL PSVSEDQNLI EDRNSSNDTP ELQSSVAEPS LIEEHSDHQP SSEGMKNEEC 2001: FLIDHLQLGL TALQNLLTKY PDLASVFSSK ERLLPLFECF SVAIASKTDI PKLCLNVLSR LTAYAPCLET MVSDGSSLLL LLQMLHSAPS FREGALHVLY 2101: ALASTPELAW AAAKHGGVVY ILELLLPLQK EIPLQQRAAA ASLLGKLVAQ PMHGPRVAIT LVRFLPDGLV SIIRDGPGEA VVHALERTTE TPELVWTPAM 2201: AASLSAQIAT MASDIYREQQ KGSVIEWDVP EQSAGQQEMR DEPQVGGIYV RRFLKDPKFP LRNPKRFLEG LLDQYLSAMA ATHYEQHPVD PELPLLLSAA 2301: LVSLLRVHPA LADHIGHLGY VPKLVAAVAY EGRRETMSSG EVKAEEIGSD GVNESTDPSS LPGQTPQERV RLSCLRVLHQ LAASTTCAEA MAATSAGNAQ 2401: VVPLLMKAIG WLGGSILALE TLKRVVVAGN RARDALVAQG LKVGLIEVLL GLLDWRTGGR YGLSSHMKWN ESEASIGRVL AVEVLHGFAT EGAHCSKVRE 2501: ILDASEVWSA YKDQKHDLFL PSNTQSAAGV AGFIENSSNS LTYALTAPPP PSHP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)