AT4G38600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HEAT repeat ;HECT-domain (ubiquitin-transferase) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18041503..18049292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 202939.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1888 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: METRSRKRAE ATSAAPSSSS SSPPPPPSAS GPTTRSKRAR LSSSSSSSLA PTPPSSSTTT RSRSSRSAAA AAPMDTSTDS SGFRRGGRGN RGNNNDNSDK 0101: GKEKEHDVRI RERERERDRA REQLNMDAAA AAARSADEDD DNDSEDGNGG FMHPNMSSAS SALQGLLRKL GAGLDDLLPS SGIGSASSSH LNGRMKKILS 0201: GLRAEGEEGK QVEALTQLCE MLSIGTEDSL STFSVDSFVP VLVGLLNHES NPDIMLLAAR ALTHLCDVLP SSCAAVVHYG AVSCLVARLL TIEYMDLAEQ 0301: SLQALKKISQ EHPTACLRAG ALMAVLSYLD FFSTGVQRVA LSTAANMCKK LPSDASDYVM EAVPLLTNLL QYHDSKVLEY ASICLTRIAE AFAPYPEKLD 0401: ELCNHGLVTQ AASLISTSNS GGGQASLSVS TYTGLIRLLS TCASGSPLGF RTLLLLGISS ILKDILLGSG VSANASVSPA LSRPADQIYE IVNLANELLP 0501: PLPEGVISLP TSTNALVKGS CQKKSSPSTS GKQEDILKIS PREKLLGDQP ELLQQFGLDL LPVLVQIYGS SVNGTIRHKC LSVIGKLMYF SSSEMIQSLI 0601: GDTNISSFLA GVLAWKDPQV LVPALQVAEI LMEKLPETFS KVFVREGVVH AVDQLVLVGK PSHASPTDKD NDCVPGSARS RRYRRRSSNA NSDGNQSEEP 0701: KNPASLTIGA NHNSLDTPTA SFMLRETVSS CAKAFKDKYF PSDGGDVDVG VTDDLLHLKN LCTKLTAGID DHKVKGKGKS KASGPFLGDF SASKEEYLIG 0801: VISEILGEIS KGDGVSTFEF IGSGVVAALL NYFSCGYFSK EKISELNLPK LRQEGLRRFK AFLEVALPFD GNEGKVPPMT VLIQKLQNAL SSLERFPVVL 0901: SHPSRSLSGS ARLSSGLSAL AHPLKLRLCR ASGEKTLRDY SSNIVLIDPL ASLAAVEEFL WPRVQRSESA LKPAAPIGNT EPGTLPSGAG VSSPSSSTPA 1001: STTRRHSSRS RSAINIGDTS KKDPVHEKGT SSSKGKGKGV MKPAQADKGP QTRSNAQKRA VLDKDTQMKP ASGDSSSEDE ELEISPVDID DALVIEEDDI 1101: SDDEDDDNED VLDDSLPMCT PDKVHDVKLA DSVDDDGLAT SGRQMNPASG GTSGAAAARA SDSIDTGIGN SYGSRGALSF AAAAMAGLGA ASGRGIRGSR 1201: DLHGRTLNRS SDEPSKLIFT AAGKQLSRHL TIYQAVQRQL MLDEDDDDRF GGSDLVSSDG SRFNDIYTIM YQRPDSQVNR LSVGGASSTT PSKSTKSATT 1301: NSSVESQSHR ASLLDSILQG ELPCDLEKSN STYNVLALLR VLEGLNQLCP RLRAQTLSDR FAEGKITSLD DLSTTAAKVP LDEFVNSKLT PKLARQIQDA 1401: LALCSGSLPS WCYQLTRACP FLFPFQTRRQ YFYSTAFGLS RALNRLQQQQ GADGSGSTNE REMRIGRLQR QKVRVSRNRI LDSAAKVMEM YSSQKAVLEV 1501: EYFGEVGTGL GPTLEFYTLL SHDLQKASLG MWRSSSGDKV SMQIGRDEIE DGKPSAANRD IVLAPLGLFP RPWPSTADIS EGGQFHKVIE YFRLLGRVMA 1601: KALQDGRLLD VPLSTAFYKL ILGQELDLHD IVLFDAELGK TLQELRVVVA RKHYLEGVGG DNSSTISDLC LRGCRIEDLS LEFTLPGYPE YILRSGDEIV 1701: DITNLEEYIS LVVDATVKRG VTRQIEAFRS GFNQVFDITS LQIFTPSELD YLLCGRRELW EVETLAEHIK FDHGYNAKSP AIINLLEIMG ELTADQQRAF 1801: CQFVTGAPRL PPGGLAVLNP KLTIVRKHSS TSSAAANGAG ASETADDDLP SVMTCANYLK LPPYSTKEIM YKKLLYAINE GQGSFDLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)