AT3G50370.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; Has 27734 Blast hits to 16708 proteins in 1259 species: Archae - 81; Bacteria - 3434; Metazoa - 10876; Fungi - 2514; Plants - 987; Viruses - 212; Other Eukaryotes - 9630 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:18676436..18683863 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 236277.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||
| Length | 2156 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDINLIISII NLEVMGGGEE VVDMAVEHER VDSSGSSFHS GGGIAGSGTR PASSGIGWSK PAATATDGDI GNHTGEGVTR GSNGLNTSLA SRVGAAEPME 0101: RAFHHVEKVA TLRGEDFPSL KASLPSASVS GQKQKEGLNQ KQKQAAGEDF SKEPRGVSGM SSSLVDMRPQ NQSGRSRLGN ELSESPSFSD GLHSSEHVRK 0201: KEYFAGPLPL VRLAPRSDWA DDERDTSHGL RDRDRDHGYS KNEPFWDRGF DLRPHVLPQK HAASNVFDKP GQRENEIAKS SLTQVRPVSG GGREANAWRV 0301: SSPLQNEGAN HNNYGARPSS RGREAAKKSN YVLSSSRENV WNNSGAREAP YQHGGRQPWN NNMDSSSNRG TYNRDGYGIE HQNRDKRSFF KSDKPHVEDP 0401: FMKDFGDSGF DVHDPFPVLG VTKKKKEALK QTEFHDPVRE SFEAELERVQ KMQEEERRRI IEEQERVIEL ARTEEEERLR LAREQDERQR RLEEEAREAA 0501: FRNEQERLEA TRRAEELRKS KEEEKHRLFM EEERRKQAAK QKLLELEEKI SRRQAEAAKG CSSSSTISED KFLDIVKEKD SADVVDWEDS ERMVDRITTS 0601: STLDLSVPMR SFESNATSQF SRDGSFGFPD RQKPTWRKED IESGSNSRFI PQNLENVPHS PQEEFFGTAG YLSAPSYFKP GFPEHSIDQS WRIPGDGRTH 0701: GRNYGMESES RENFGEQYGD PGWGQSQGRP RHGPYSPYPE KLYQNPEGDD YYPFGRPRYS VRQPRVLPPP QESRQKTSFR SEVEHPGPST SIGGINYSHK 0801: GRTNSTVLAN YIEDHHVLPG SGIDEHRRFD TKLTGRCDSQ SSLSVTSPPD SPVHLSHDDL DESADSTVLP TSRMGEDAGL LEKGGAPIIS SDIGKDSLMM 0901: ATGSVSCWDN EEWTLDSNER LQEQEEYDED EDGYQEEDKI HGVDENIDLA QELEEMHLDD KDSNLVLGFN EGVEVEIPSD DFEKCQRNSE STFPLHQHTV 1001: DSLDDERPSI ETSRGEQAAQ PAVVSDPLGM HNASRTFQGA ETTMQNLTVH PNIGRQSFEV ASKVDSTSNS TVSTHPVIPL HSAALHPSSL QTAIPPVSTT 1101: SAQMEEPVKF QFGLFSGPSL IPSPFPAIQI GSIQMPLPLH PQFGSSLTHM QQPQPPLIQF GQLPYTSPIS QGVLPPPHHS VVQANGLSTY ALNQNPGSLV 1201: TVQLGQGNSA NLLARNAATS VSHPQLSVLR RPTNVSDEGT LKNANLPPAR ASIEAAVSPQ KQPELSGNSQ LPSRKMSHGK SNFAERQSGY QVQTDTSAVR 1301: NSGLRSSGTA EVSRVDSGGN RRYRRQRVEF RVRESNWPSS DENRNGNGRA QTSTKIGSRK YVVSNKSQKQ ALDSSASGLN AMQKTVSGGS FENRLGKDAV 1401: VKNPLSPNSG QANLKRNMVS EKEIDAPLQI GIVRVFEQQG IEAPSDDDDF IEVRSKRQML NDRREQREKE IKEKSQAAKA FRKPRSTFQN NTTAARSNRS 1501: PPASRAANNK QFNPVSNRQT LAPIGTPSPK IDSHVDEKSG SNKSTQESSA LPVIPKNDQN PASGFVFSNK NKVLDNSHTP VGTWGNQLTY QPVMALTQSQ 1601: LDEAMKPVSH LSCVSVENGA NRISESNSTS TSVVPKNNTF SSSTSPINSL LAEGKIQFGA VTSSTVIPPC GGRTEKDSSL YFEKDNKHRN PSSTGIEICE 1701: AEAEAAASAI AVAAITNDET SGNALSTGSV LPVETKIYGG TELDDGAASG TVGGQTSRSK AEESLIVSLP ADLSVDTPIS LWPQLPSPHN SNQMITHFPP 1801: GPPHYPFYDV NPMLRGPIFA FGPHHDAGAT QSQSQKGPVT VSGPPTTWQQ QGHSGVDSFY APPAGFTGPF LTPPGAIPGV QGPPHMFVYN HFAPVGQFGG 1901: LSFMGTTYIP SGKQPDWKHN PNVSSSPVGG DGDVNNPNVA SMQCNIVPAS LQHLPMPMFD PSPFQSSSQE MPIRARWPYM PFSGPPTMQM QKQQEGTDGS 2001: NLPSPQFNNN MLPPPPPNRY PNVQASTVVD AMVDSSNAYS STTGAPPAKP TSTLSDPNSN NTQNPNGPGF KPPQQQQQQS SQEKNTQSQH VGGPSHHHQH 2101: QHHQNRRSGY HGRNQPMARE RGFPNNPKVK QIYVAKQTGN SCASASSTTT TTSPSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)