AT4G15180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET domain protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SET domain protein 2 (SDG2); EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (TAIR:AT1G77300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:8651999..8662178 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 267074.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2335 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSDGGVACMP LLNIMEKLPI VEKTTLCGGN ESKTAATTEN GHTSIATKVP ESQPANKPSA SSQPVKKKRI VKVIRKVVKR RPKQPQKQAD EQLKDQPPSQ 0101: VVQLPAESQL QIKEQDKKSE FKGGTSGVKE VENGGDSGFK DEVEEGELGT LKLHEDLENG EISPVKSLQK SEIEKGEIVG ESWKKDEPTK GEFSHLKYHK 0201: GYVERRDFSA DKNWKGGKEE REFRSWRDPS DEIEKGEFIP DRWQKMDTGK DDHSYIRSRR NGVDREKTWK YEYEYERTPP GGRFVNEDIY HQREFRSGLD 0301: RTTRISSKIV IEENLHKNEY NNSSNFVKEY SSTGNRLKRH GAEPDSIERK HSYADYGDYG SSKCRKLSDD CSRSLHSDHY SQHSAERLYR DSYPSKNSSL 0401: EKYPRKHQDA SFPAKAFSDK HGHSPSRSDW SPHDRSRYHE NRDRSPYARE RSPYIFEKSS HARKRSPRDR RHHDYRRSPS YSEWSPHDRS RPSDRRDYIP 0501: NFMEDTQSDR NRRNGHREIS RKSGVRERRD CQTGTELEIK HKYKESNGKE STSSSKELQG KNILYNNSLL VEKNSVCDSS KIPVPCATGK EPVQVGEAPT 0601: EELPSMEVDM DICDTPPHEP MASDSSLGKW FYLDYYGTEH GPARLSDLKA LMEQGILFSD HMIKHSDNNR WLVNPPEAPG NLLEDIADTT EAVCIEQGAG 0701: DSLPELVSVR TLPDGKEIFV ENREDFQIDM RVENLLDGRT ITPGREFETL GEALKVNVEF EETRRCVTSE GVVGMFRPMK RAIEEFKSDD AYGSESDEIG 0801: SWFSGRWSCK GGDWIRQDEA SQDRYYKKKI VLNDGFPLCL MQKSGHEDPR WHHKDDLYYP LSSSRLELPL WAFSVVDERN QTRGVKASLL SVVRLNSLVV 0901: NDQVPPIPDP RAKVRSKERC PSRPARPSPA SSDSKRESVE SHSQSTASTG QDSQGLWKTD TSVNTPRDRL CTVDDLQLHI GDWFYTDGAG QEQGPLSFSE 1001: LQKLVEKGFI KSHSSVFRKS DKIWVPVTSI TKSPETIAML RGKTPALPSA CQGLVVSETQ DFKYSEMDTS LNSFHGVHPQ FLGYFRGKLH QLVMKTFKSR 1101: DFSAAINDVV DSWIHARQPK KESEKYMYQS SELNSCYTKR ARLMAGESGE DSEMEDTQMF QKDELTFEDL CGDLTFNIEG NRSAGTVGIY WGLLDGHALA 1201: RVFHMLRYDV KSLAFASMTC RHWKATINSY KDISRQVDLS SLGPSCTDSR LRSIMNTYNK EKIDSIILVG CTNVTASMLE EILRLHPRIS SVDITGCSQF 1301: GDLTVNYKNV SWLRCQNTRS GELHSRIRSL KQTTDVAKSK GLGGDTDDFG NLKDYFDRVE KRDSANQLFR RSLYKRSKLY DARRSSAILS RDARIRRWAI 1401: KKSEHGYKRV EEFLASSLRG IMKQNTFDFF ALKVSQIEEK MKNGYYVSHG LRSVKEDISR MCREAIKDEL MKSWQDGSGL SSATKYNKKL SKTVAEKKYM 1501: SRTSDTFGVN GASDYGEYAS DREIKRRLSK LNRKSFSSES DTSSELSDNG KSDNYSSASA SESESDIRSE GRSQDLRIEK YFTADDSFDS VTEEREWGAR 1601: MTKASLVPPV TRKYEVIEKY AIVADEEEVQ RKMRVSLPED YGEKLNAQRN GIEELDMELP EVKEYKPRKL LGDEVLEQEV YGIDPYTHNL LLDSMPGELD 1701: WSLQDKHSFI EDVVLRTLNR QVRLFTGSGS TPMVFPLRPV IEELKESARE ECDIRTMKMC QGVLKEIESR SDDKYVSYRK GLGVVCNKEG GFGEEDFVVE 1801: FLGEVYPVWK WFEKQDGIRS LQENKTDPAP EFYNIYLERP KGDADGYDLV VVDAMHMANY ASRICHSCRP NCEAKVTAVD GHYQIGIYSV RAIEYGEEIT 1901: FDYNSVTESK EEYEASVCLC GSQVCRGSYL NLTGEGAFQK VLKDWHGLLE RHRLMLEACV LNSVSEEDYL ELGRAGLGSC LLGGLPDWMI AYSARLVRFI 2001: NFERTKLPEE ILKHNLEEKR KYFSDIHLDV EKSDAEVQAE GVYNQRLQNL AVTLDKVRYV MRHVFGDPKN APPPLERLTP EETVSFVWNG DGSLVDELLQ 2101: SLSPHLEEGP LNELRSKIHG HDPSGSADVL KELQRSLLWL RDEIRDLPCT YKCRNDAAAD LIHIYAYTKC FFKVREYQSF ISSPVHISPL DLGAKYADKL 2201: GESIKEYRKT YGENYCLGQL IYWYNQTNTD PDLTLVKATR GCLSLPDVAS FYAKAQKPSK HRVYGPKTVK TMVSQMSKQP QRPWPKDKIW TFKSTPRVFG 2301: SPMFDAVLNN SSSLDRELLQ WLRNRRHVFQ ATWDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)