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AT3G15120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48-related / CDC48-related (TAIR:AT1G05910.1); Has 80986 Blast hits to 58843 proteins in 3591 species: Archae - 1718; Bacteria - 20912; Metazoa - 22400; Fungi - 8848; Plants - 5536; Viruses - 480; Other Eukaryotes - 21092 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0464eggNOG:KOG0732EMBL:CP002686EnsemblPlants:AT3G15120
EnsemblPlants:AT3G15120.1entrez:820743Gene3D:3.40.50.300GeneID:820743
GO:GO:0005524GO:GO:0009506GO:GO:0016787Gramene:AT3G15120.1
hmmpanther:PTHR23069hmmpanther:PTHR23069:SF3InParanoid:F4IXH3InterPro:IPR003593
InterPro:IPR003959InterPro:IPR003960InterPro:IPR027417iPTMnet:F4IXH3
KEGG:ath:AT3G15120ncoils:CoilOMA:DLWAVETPaxDb:F4IXH3
Pfam:PF00004PRIDE:F4IXH3PROSITE:PS00674ProteinModelPortal:F4IXH3
Proteomes:UP000006548RefSeq:NP_188130.1scanprosite:PS00674SMART:SM00382
STRING:3702.AT3G15120.1SUPFAM:SSF52540TAIR:AT3G15120UniGene:At.39103
UniProt:F4IXH3
Coordinates (TAIR10) chr3:-:5088487..5095482
Molecular Weight (calculated) 214645.00 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.57
Length 1954 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKSSHEVTKN HSGSPSGKKS KKLAAICEEE YKKNHGESQD RDGGSGLACA DSELRRSSRV RKIPSILDAS PPPPKKRQRF NKSSSSIEKG KRNEDGDSDA
0101: PDGWKSRLRS RRKKNVGFQA SGRQRRVVKG KRKLVFRNRA CELSEKAEAS DREEEKGALK GGKLNKAKKP VDVKESESSE DGGKESDTSN SEDVQKESDT
0201: SNSEDESASE SEESMQADSA AREKYQEKKA TKRSVFLESE NEAEVDRTET ESEDGTDSTD NEIDDSDEEG ESETQCSAEK TGSETEANVE EMRADTNVTM
0301: EAVQNESRNQ MEELENEIEM GVEDEKKEMS VIVSESGNGT GIREDENKEM DVIVSESGNG TGILEGENKK MEVMVSGSGN GTGIREDDSD FAAKVKNREG
0401: DTLHPELLGE ASTEINESLK QNDDIGEQGV SRTPSNNKTK EHNEFLDRGG ESVEMPDELP IQNETCKKAV DSVSTSSDRL GKPLFKQTRR CGLCGVGTDG
0501: KLPKKLMQDN GDSDVEAPSG SSSSEEQKYD ILDGFGDDPG WLGRLLGPIN DRYGISGTWV HQNCAVWSPE VYFAGVGCLK NIRAALFRGR SLKCTRCDRP
0601: GATTGCRPCA RANGCIFDHR KFLIACTDHR HHFQPHGRQC QVRMTKMKTK RMRLEMKKHS NDAWRKDVEA EEKWFEKCGE DEEFLKRESK RLHRDLLRVA
0701: PEYIGGSDSE SGKAFEGWDS VAGLEGVTQC MKEVVLIPLL YPEFFDNLGL TPPRGILLHG HPGTGKTLVV RALIGSLARG NRRIAYFARK GADCLGKYVG
0801: DAERQLRLLF QVAEKCQPSI IFFDEIDGLA PKRSRQQDQT HSSVVSTLLA LLDGLKSRGS VVVIGATNYP DAIDPALRRP GRFDREIYFP LPSVDDRAAI
0901: ISLHTRKWPK PVSGYLLKWI AKETAGFAGA DIQALCTQAA MIALNRSFPL QESLAAAELG VSSSNRAALP SFSVEERDWL EALSRSPPPC SRRGAGIAAS
1001: DIFSSPLPTY LVPSLLPPLC SLLVALHLDE RIFLPPLLSK AAVDVQNVIR SALSDKKITE GCWWSHVDTL LHEVDVVKDI VQRLSCTGIL DGGCDLVGSV
1101: ASIPGTGDCS LGSAKFMVPR VCRHPGVLGN ASVESTSKSG FQLLIAGGPK SGQRHLASCV LHCFIGNAEM LKIDTATISQ EGNGDLVLGV THLLIKCASK
1201: KSCVVFMPRV DLWAVKTETP LNEEVECDDD SVQENCSEMG EEKALQNGVR VSHAWNTFFE QVETLRVSTK MMILATSGMP YKLLPPKIQQ FFKTDLSKEC
1301: QPTMSEAVPQ FNVQVVESSD QDIAIDLSAT ELLRRAIQVF LHLVHQGSHT HCGLKKKYKG EDLDQGCRDA APQNNTDHRA GEEAVVKSKR LDDGSLKVPP
1401: LPININVKPK SSLQLAVSTF GYQILQYPQF AELCWVTSKL KEGPSADVSG PWRGWPFNSC ITRPCNSSEQ TITSSDSNNV KGKDSTGIVR GLTAVGLSAY
1501: RGTYISLREV SFEVRKVLEL LVGRISVKIN AGKDRCRYIR ILSQVAYLED LVNSWVYAMR SFESTTQTES TNPLPCSVVN PSVRNEPTEQ GTSDQLKGSE
1601: EDLKEDTQNM NCPDPIASSN LTDNHQPVVE IANGHNGTNH ESFLEDTGHL TTHSTDGLTL VKENVDVISD TEMMIEDSGV NPFRQAVLLD LNSPAADHEQ
1701: NETPHGSCEV ETTGTVISLQ EKADSLDNPN GSGDSNSISL EDPHKSADSN NGKAWDGVHG LESANNMPEP VEQVETTGRT NPQDDPSLVC LYRCCSQCVS
1801: ILQDSMHKLV TRELRLGRSS ITTEGIHDAV SSLSVELISA VRKFISVKNN GTMQEAKVKD HEECPENEAC FCKRLSGNFL ASVECCSHSA EMQGSLDEGN
1901: TYRRPKTWLE PVFVFKDGIL VPVSTEDDRS LHCKYDSFCL GSLIELIATE MKPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)