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AT1G58250.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
endoplasmic reticulum 0.923
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain
Curator
Summary (TAIR10)
SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.
Computational
Description (TAIR10)
SABRE (SAB); INVOLVED IN: response to ethylene stimulus, multidimensional cell growth, cell growth; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (TAIR:AT5G49680.2); Has 229 Blast hits to 173 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 113; Fungi - 17; Plants - 79; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSYReggNOG:KOG1910EMBL:AC073943EMBL:AC079131
EMBL:AK229585EMBL:BK000517EMBL:CP002684EMBL:U19121
EMBL:U19122EMBL:U19123EMBL:U19124EMBL:U19125
EMBL:U19126EMBL:U19127EMBL:U19128EMBL:U19129
EMBL:U19130EMBL:U19131EMBL:U19132EMBL:U19133
EMBL:U19134EnsemblPlants:AT1G58250EnsemblPlants:AT1G58250.1entrez:842193
GeneID:842193GO:GO:0005576GO:GO:0005794GO:GO:0007275
GO:GO:0010105GO:GO:0016036GO:GO:0030307Gramene:AT1G58250.1
hmmpanther:PTHR15678hmmpanther:PTHR15678:SF6HOGENOM:HOG000030765InterPro:IPR019441
InterPro:IPR019443iPTMnet:Q6IMT1ncoils:CoilPaxDb:Q6IMT1
Pfam:PF10347Pfam:PF10351PIR:A96616PRIDE:Q6IMT1
PRO:PR:Q6IMT1Proteomes:UP000006548RefSeq:NP_176121.3SMART:SM01214
STRING:3702.AT1G58250.2TAIR:AT1G58250tair10-symbols:SABTMHMM:TMhelix
UniGene:At.17297UniProt:F4I9T5
Coordinates (TAIR10) chr1:-:21587317..21601373
Molecular Weight (calculated) 293371.00 Da
IEP (calculated) 8.56
GRAVY (calculated) -0.40
Length 2607 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAASPAKFFF GFLIVSIVLW MIFILCSRLF AWMLSRVLGA SVVFRVGGWK CLKDVVVKFK KGAIESVSAS EIKLSLRQSL VKLGVGFLSR DPKVQVLISD
0101: LEVVMRSSTS TTNLQKAKSH KPRTSGRGKW MVVANVARFL SVSVADMVVK TTKVIVEVKE LKLDINKDGG TKPNLYVKLN VLPILVHLCE SRIISDQSSN
0201: VSFECCPASQ ASSASPDRSA ATLFCDELSL SSEFGHDRAV GIVVRNVEVT SGDVILNFDE DSFPKSKQSS ASLRSDEVRT SATAASSAKK PHKEHQLVAA
0301: LAKYSSSFPE KVSFSLPKLD VRCVNREHDL LAENNITGIQ LRSVKSKSFE DTGESTRLDV QMELSEIHVF READSSILEI MKVDVVSFIY IPVQPVLPIR
0401: AEVDIKLGGT RCNLFISRLQ PWLRLHFLKK KKLVLQEKTH NLEKTKAADM KAIMWTGTVS APEMTVMLYG TEDIPLYHFC SQSSHVFANN VSSLGTAVHV
0501: ELGELNLHLA DEYQECFREH LFGIEPNSGS LMHIAKVSLD WGRRDRTSSD EVGFRSKLVL SVDVTGMGIY FSFKRVQSLI INALSFKALF KTLSVTGKKM
0601: NKTVSVQPSK GSGKGTRLVN INLERCCVNF CDDTGLDNTV IDDPKSVNYG SQGGRVSFSS LADGTPRTAS ILSTAPEACK RLKYSVSLEI SQFSFCLNKD
0701: KLSTQMELGR AKSIYQEYLE EHTPCSNVIL FDMHNAKLVR RSGGLNEIDV CSLFSATHIS LGWEPDVHLS FYELFLRLRS LVYAQRHKEP ESGCNKGISS
0801: VKDGGPSEKI NQSNSVNKQK KKESMFAIDV ETLTISAEVG DGVEVKLEAQ SIFSENACIG VLLEGLMLAF NGSRVFKTTR MQVSRIPTAT NLSDAVPVMT
0901: DGPWDWVVQG LDVHICMPYK LQLRAIDDSI EEMLRGLKLI SVAKGKHILS GKRESSKPKK SSPKFGRIKF CIRRLTADIE EEPIQGWLDE HYQLVKKEAC
1001: ELAVRLKFLE DLIHKAGQSP KGAETSAVLD ERKMFFDGVE IDVEDPVAIN KVKEEIHKRS FQSYYQACQG LAPSEGSGAC REGFQAGFKP SAARTSLLSV
1101: CATDFDLSLT AVHGGDAGLI EVLKKLDPIC EENDIPFSRL YGSNVYLNTG SLVVQLRNYT LPLLSGTSGK CEGRIVLAQQ ATCFQPQISQ DVFVGRWRKV
1201: KMFRSASGTT PPLKTYSDLR IHFEQGEVSF GVGYEPAFAD ISYAFTVALR RANLSHRNPD MVQVIKKERS LPWWDDMRNY VHGNITLSFS ESKWSVLATT
1301: DPYESLDQLQ IVSGPIELKQ SDGRVFVSAK DFKIKLSSLE SLISRHSLKV PVRASGAAFI EAPDFNLEVT MDWDCESGNS LNHYLYAFPA EGKPREKVFD
1401: PFRSTSLSLR WNFSLRPEKF HQSPSSTEHP TDVGTVYSSQ DKPDSIPLAS PTMNLGAHDL AWILKFWGLN YYPPHKLRSF SRWPRFGVPR AARSGNLSLD
1501: KVMTEFMLRV DATPSLIKYM PWDSDDPAKG LTFNMAKLKY ELCYSRGKQK YTFECKRDAL DLVYQGLDLH VPKAFINKDE HPCIPGSVQV LRKSTQDALI
1601: DRVPSGKDHK RYEKHRDEGF LLSSDYFTIR RQAPKADPER LLAWQEAGRR NLEMTYVRSE FENGSESDEH IRSDPSDDDG YNVVIADNCQ RVFVYGLKLL
1701: WTIENRDAVW SFVGGISKAF EPPKPSPSRQ YTQRKIHEEN QKESCPETHQ GEMSRSSASP GRNLPSSPSH SIKIEKSDDI GTVETIESEE EGTRHFMVNV
1801: IEPQFNLHSE EANGRFLLAA VSGRVLARSF HSIMRVGVEV IEQALGTGSV KIPECSPEMT WTRMEVSVML EHVQAHVAPT DVDPGAGLQW LPKIRRNSPK
1901: VKRTGALLER VFMPCDMYFR YTRHKGGTPD LKVKPLKELT FNSHNIIATM TSRQFQVMLD VLTNLLFARL PKPRKSSLQC PTEDEDVEEE ADEVVPYGVE
2001: EVELAKINLE EKERERKLLL DDIRKLSPCS DNMDDTHIER EGELWMISTR RSILVQGLKK ELTYAQKSRK AASASLRMAL QKAAQLRIME KEKNKSPSYA
2101: MCISLQINKV VWSMLVDGKS FAEAEINDMI YDFDRDYKDI GVARFTTKYF VVRNCLPNAK SDMLLSAWNP PPEWGKKVML RVDAKQGAPK DAHYPLELFH
2201: VEIYPLRIHL TETMYRMMWE YFFPEEEQDS QSRQEVWKIS TTAGSKRVKK GLVGHESSGH AIKDVEASRM SSSALSASAA VQSQSNDDSV QKSNVICLRS
2301: STGASAQELR RTSSFDREEN VAEPIANELV LQAHSCNVSS SIEQQEDFSK QKVKEIKPVK SGRSSHEEKK AGKSHEEKKS RPRKMMEFHN IKISQVELLV
2401: TYEGSRFVVN DLKLLMDTFH RVEFTGTWRR LFSRVKKHII WGVLKSVTGM QGKKFKDKSH NNRESTDNDL NLSDNDQTGK PDQQQVTWFK RQSDGAGDGF
2501: VTSIRGLFNT QRRKAKAFVL RTMRGEAEND FHGDWSDSDV EFSPFARQLT ITKAKRLIRR HTKKFRPRSQ RGSTSQQRES LPSSPIETTP FESGYSSGSS
2601: PYEDFRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)