AT5G61140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : U5 small nuclear ribonucleoprotein helicase | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a predicted protein with 30% identity with MER3/RCK. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20721 Blast hits to 12373 proteins in 2023 species: Archae - 1746; Bacteria - 9151; Metazoa - 2213; Fungi - 2164; Plants - 862; Viruses - 60; Other Eukaryotes - 4525 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:24589999..24603311 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 243191.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2146 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVHNSPCNKH KTTSISWTRI LAGRCTGLFV QVSNRRRFRT QAIAFFLGEP TRGENTTEEK NPKRHKYRDF VMLVQLPRLT SSLREPFDID QAYLRRKTIL 0101: QTLNKPRSSG NRLDESDLAK RIVHQWEGAS LEVRQAYKQF IGAVVELIDR EVPSDEFREV AFSAYRLFNN PVEEDDSDIN DNISISGKKL ELQNLVGHAV 0201: SDANVKNVAS FAQALYSIQP THQSETYADE VNGGAEFGAD LVFNLPARFL VEASLDETGF VDVESNDAHT SFSEGWSGVS DTKNNLSAGK FNLSWLRDAC 0301: GRMVRETNSQ LSREELAMAI CRFLDSDKPG EEIAGDLLDL VGDGAFETVQ DLIMHRKEIV DAIHHGQMIL KSDKAASNTQ SRMPTYGTQV TVQTESAKQI 0401: EKLRRKEEKK NKRNADLGLE SEISEANFSS LLEASEKKTA FEDLIGSGEA NSLALALPQG TVRKHLKGYE EVFIPPTPTA QMKPGEKLIE IKELDDFAQA 0501: AFHGYKSLNR IQSRIFQTVY HTNENILVCA PTGAGKTNIA MISVLHEIKQ HFRDGYLHKN EFKIVYVAPM KALAAEVTSA FSRRLAPLNM VVKELTGDMQ 0601: LTKTELEETQ MIVTTPEKWD VITRKSSDMS MSMLVKLLII DEVHLLNDDR GAVIEALVAR TLRQVESTQT MIRIVGLSAT LPSYLQVAQF LRVNTDTGLF 0701: YFDSSYRPVP LAQQYIGITE HNFAARNELL NEICYKKVVD SIKQGHQAMI FVHSRKDTSK TAEKLVDLAR QYETLDLFTN ETHPQFQLMK KDVMKSRNKD 0801: LVKFFEAGFG IHHAGMLRSD RTLTERLFSD GLLKVLVCTA TLAWGVNLPA HTVVIKGTQL YDAKAGGWKD LGMLDVMQIF GRAGRPQFDK SGEGIIITSH 0901: DKLAYYLRLL TSQLPIESQF ISSLKDNLNA EVVLGTVTNV KEACAWLGYT YLSIRMKLNP LAYGIGWEEI IADPSLSLKQ RALVADAARS LDKAKMMRFD 1001: EKSGNFYCTE LGRVASHFYI QYSSVETYNE MLKRHMNESE IINMVAHSSE FENIVVREEE QHELETLARS CCPLEVKGGP SNKHGKISIL IQLYISRGSI 1101: DAFSLVSDAS YISASLARIM RALFEICLRK GWCEMTLFML EYCKAVDRQL WPHQHPLRQF ERDLPSDRRD DLDHLYEMEE KEIGALIRYN PGGRHLGYFP 1201: SIQLAATVSP ITRTVLKVDL LITPNFIWKD RFHGTALRWW ILIEDTENDY IYHSDLFTLT KRMARGEPQK LSFTVPIFEP HPPQYYVHAV SDSWLHAETY 1301: FTISFHNLAL PEARTSHTEL LDLKPLPVTS LGNKLYESLY KFSHFNPIQT QIFHVLYHTD NNVLVGAPTG SGKTISAELA MLRLFSTQPD MKVVYIAPLK 1401: AIVRERMNDW KKHLVAPLGK EMVEMTGDYT PDLVALLSAD IIISTPEKWD GISRNWHTRS YVKKVGLVIL DEIHLLGADR GPILEVIVSR MRYISSQTER 1501: SVRFVGLSTA LANAGDLADW LGVGEIGLFN FKPSVRPVPI EVHIQGYPGK YYCPRMNSMN KPAYAAICTH SPTKPVLIFV SSRRQTRLTA LDLIQFAASD 1601: EHPRQFLSVS EEDLQMVLSQ ITDQNLRHTL QFGIGLHHAG LNDHDRSAVE ELFTNNKIQV LVSTSTLAWG VNLPAHLVII KGTEYFDGKT KRYVDFPLTE 1701: ILQMMGRAGR PQFDQHGKAV ILVHEPKKSF YKKFLYEPFP VESSLKEKLH DHFNAEIVSG TIGNKEDAVH YLTWTYLFRR LMANPAYYGL EGTQDETICS 1801: YLSRLVQTTF EDLEDSGCLK VNEDSVEPTM LGTIASQYYL CYMTVSMFGS NIGPDTSLEA FLHILAGASE YDELPVRHNE ENYNKTLSDR VRYPVDNNHL 1901: DDPHVKANLL FQAHFSQLAL PISDYNTDLK SVLDQSIRIL QAMIDICANS GWLSSSLTCM RLLQMVMQGM WSDQDSSLWM IPCMNDLLLG SLTARGIHTL 2001: HQLLNLPRET LQSVTENFPA SRLSQDLQRF PRIQMNVRLQ KKDSDGKKKP STLEIRLEKT SKRNSSRALA PRFPKVKDEA WWLVLGDTST SELFAVKRVS 2101: FTGRLITRME LPPNITSFQD TKLILVSDCY LGFEQEHSIE QLARRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)