AT1G70320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-protein ligase 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ubiquitin-protein ligase 2 (UPL2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: cytosol, mitochondrion, ubiquitin ligase complex, nucleus; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 1 (TAIR:AT1G55860.2); Has 34660 Blast hits to 19733 proteins in 1213 species: Archae - 286; Bacteria - 8191; Metazoa - 9374; Fungi - 5439; Plants - 1788; Viruses - 520; Other Eukaryotes - 9062 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26488745..26501281 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 403639.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 3658 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MKLRRRRASE VPTKISLFIN SVTSVPLELI QEPLASFRWE FDKGDFHHWV DLFYHFDTFF EKHVKVRKDL RIEEEFDESD PPFPKDAVLQ VLRVIRLVLE 0101: NCTNKQFYTS YEQHLSLLLA STDADVVEAC LQTLAAFLKR PTGKYSIRDA SLNLKLFSLA QGWGGKEEGL GLTSCATEHS CDQLFLQLGC TLLFEFYASD 0201: ESPSELPGGL QVIHVPDVSM RSESDLELLN KLVIDHNVPP SLRFALLTRL RFARAFSSLA TRQQYTCIRL YAFIVLVQAS GDTENVVSFF NGEPEFVNEL 0301: VTLVSYEDTV PAKIRILCLQ SLVALSQDRT RQPTVLTAVT SGGHRGLLSG LMQKAIDSVI CNTSKWSLAF AEALLSLVTV LVSSSSGCSA MREAGLIPTL 0401: VPLIKDTDPQ HLHLVSTAVH ILEVFMDYSN PAAALFRDLG GLDDTIFRLK QEVSRTEDDV KEIVCCSGSN GPEDDTEQLP YSEALISYHR RLLLKALLRA 0501: ISLGTYAPGN TNLYGSEESL LPECLCIIFR RAKDFGGGVF SLAATVMSDL IHKDPTCFNA LDSAGLTSAF LDAISDEVIC SAEAITCIPQ CLDALCLNNS 0601: GLQAVKDRNA LRCFVKIFSS PSYLKALTSD TPGSLSSGLD ELLRHQSSLR TYGVDMFIEI LNSILIIGSG MEATTSKSAD VPTDAAPVPM EIDVDEKSLA 0701: VSDEAEPSSD TSPANIELFL PDCVCNVARL FETVLQNAEV CSLFVEKKGI DTVLQLFSLP LMPLSTSLGQ SFSVAFKNFS PQHSAGLARI LCSYLREHLK 0801: KTNNLLVSIE GTQLLKLESA VQTKILRSLS CLEGMLSLSN FLLKGSASVI SELSAANADV LKELGITYKQ TIWQMALCND TKEDEKKSVD RASDNSVSAS 0901: SSTAERESDE DSSNALAVRY TNPVSIRSSS SQSIWGGHRE FLSVVRSGRG VHGHTRHAIA RMRGGRTRRH LESFNFDSEI PADLPVTSSS HELKKKSTEV 1001: LIAEILNKLN CTLRFFFTSL VKGFTSANRR RIDGPSLSSA SKTLGTALAK VFLEALNFQG YGAAAGPDTS LSLKCRYLGK VVDDITFLTF DTRRRVCFTA 1101: MVNSFYVHGT FKELLTTFEA TSQLLWKVPF SIRASSTENE KSGERNLWSH SKWLVDTLQN YCRALDYFVN STYLLSPTSQ TQLLVQPASV DLSIGLFPVP 1201: REPETFVRNL QSQVLEVILP IWNHPMFPDC NPNFVASVTS LVTHIYSGVV DTRENRSGAT QGTNQRALPL QPDEAIVGMI VEMGFSRSRA EDALRRVGTN 1301: SVEMAMDWLF TNPEDPVQED DELAQALALS LGNSSETPKL EDTEKPVDVP QEEAEPKEPP VDEVIAASVK LFQSDDSIAF PLVDLFVTLC NRNKGEDRPK 1401: IVFYLIQQLK LVQLDFSKDT GALTMIPHIL ALVLSEDDNT REIAAQDGIV AVAIGILTDF NLKSESETDI LAPKCISALL LVLSMMLQAQ TRLSSEYVEG 1501: NQGGSLVLSD SPQDSTAALK DALSSDVAKG ESNQALESMF GKSTGYLTME ESSKVLLIAC GLIKQRVPAM IMQAVLQLCA RLTKSHALAI QFLENGGLSS 1601: LFNLPKKCFF PGYDTVASVI VRHLVEDPQT LQIAMETEIR QTLSGKRHIG RVLPRTFLTT MAPVISRDPV VFMKAVASTC QLESSGGTDF VILTKEKEKP 1701: KVSGSEHGFS LNEPLGISEN KLHDGSGKCS KSHRRVPTNF IQVIDQLIDI VLSFPGLKRQ EGEAANLISM DVDEPTTKVK GKSKVGEPEK AELGSEKSEE 1801: LARVTFILKL LSDIVLMYLH GTSVILRRDT EISQLRGSNL PDDSPGNGGL IYHVIHRLLP ISLEKFVGPE EWKEKLSEKA SWFLVVLCSR SNEGRKRIIN 1901: ELTRVLSVFA SLGRSSSQSV LLPDKRVLAF ANLVYSILTK NSSSSNFPGC GCSPDVAKSM IDGGTIQCLT SILNVIDLDH PDAPKLVTLI LKSLETLTRA 2001: ANAAEQLKSE VPNEQKNTDS DERHDSHGTS TSTEVDELNQ NNSSLQQVTD AVDNGQEQPQ VSSQSEGERG SSLTQAMLQE MRIEGDETIL PEPIQMDFFR 2101: EEIEGDQIEM SFHVEDRADD DVDDDMDDEG EDDEGDDEDA DSVEDGAGVM SIAGTDVEDP EDTGLGDEYN DDMVDEDEED EDEYNDDMVD EDEDDEDEYN 2201: DDMVDEDEDD FHETRVIEVR WREALDGLDH FQIVGRSGGG NGFIDDITAE PFEGVNVDDL FALRRSLGFE RRRQTGRSSF DRSGSEVHGF QHPLFSRPSQ 2301: TGNTASVSAS AGSISRHSEA GSYDVAQFYM FDSPVLPFDQ VPVDPFSDRL GGGGAPPPLT DYSVVGMDSS RRGVGDSRWT DVGHPQPSSL SASIAQLIEE 2401: HFITNLRASA PVDTVVERET NTTEVQEQQQ PDVPPSVGSE TVLGDGNEGG EQSEEHELLN NNEVMHPLPL NSTPNEIDRM EVGEGGGAPI EQVDREAVHL 2501: ISSAQGQSDT SGIQNVSVTA IPPPVDDPDS NFQPSVDVDM SSDGAEGNQS VQPSPLDGDN NELSSMEATQ DVRNDEQVDE GSLDGRAPEV NAIDPTFLEA 2601: LPEDLRAEVL ASQQAQSVQP PTYEPPSVDD IDPEFLAALP PEIQREVLAQ QRAQRMLQQS QGQPVDMDNA SIIATLPADL REEVLLTSSE AVLAALPPPL 2701: LAEAQMLRDR AMRHYQARSR VFGSSHRLNN RRNGLGYRLT GMERGVGVTI GQRDVSSSAD GLKVKEIEGD PLVNADALKS LIRLLRLAQP LGKGLLQRLL 2801: LNLCAHSFTR ANLVQLLLDM IRPEMETLPS ELALTNPQRL YGCQLNVVYG RSQLLNGLPP LVFRRVLEVL TYLATNHSAV ADMLFYFDSS LLSQLSSRKG 2901: KEKVTHETDS RDLEIPLVVF LKLLNRPQLL QSTSHLALVM GLLQVVVYTA ASRIEGWSPS SGVPEKLENK PVGEEASSET QKDAESELSV ARRKNCAELY 3001: NIFLQLPQSD LCNLCMLLGY EGLSDKIYSL AGEVLKKLAA VDVTHRKFFT KELSELASGL SSSTVRVLAT LSTTQKMSQN TCSMAGASIL RVLQVLSSLT 3101: STIDDSNVGT DKETDQEEQN IMQGLKVALE PLWQELGQCI SMTELQLDHT AATSNVNPGD HVLGISPTSS LSPGTQSLLP LIEAFFVLCE KIQTPSMLQQ 3201: DATVTAGEVK ESSTHGSSSK TIVDSQKKID GSVTFSKFVE KHRRLLNSFV RQNPSLLEKS FSMMLKAPRL IDFDNKKAYF RSRIRHQHDQ HISGPLRISV 3301: RRAYVLEDSY NQLRMRSPQD LKGRLNVQFQ GEEGIDAGGL TREWYQLLSR VIFDKGALLF TTVGNDATFQ PNPNSVYQTE HLSYFKFVGR MVAKALFDGQ 3401: LLDVYFTRSF YKHILGVKVT YHDIEAVDPD YYKNLKWLLE NDVSDILDLT FSMDADEEKH ILYEKTEVTD YELKPGGRNI RVTEETKHEY VDLVADHILT 3501: SAIRPQINAF LEGLNELIPR ELVSIFNDKE LELLISGLPE IDFDDLKANT EYTSYTVGSP VIRWFWEVVK AFSKEDMARF LQFVTGTSKV PLEGFKALQG 3601: ISGPQRLQIH KAYGSPERLP SAHTCFNQLD LPEYQSKEQV QERLLLAIHE ANEGFGFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)