AT3G47910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:17674737..17681444 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 181047.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.13 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1606 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGQKKKTSAS RSKQPPSSTA VTVVEVEPSE ISACSFNDGG FSGPDANGEP LDSSVVKLEC EKALKSFGRG SYNKAIRLIK DSCSRHQDSA LIHRVQGTIC 0101: VKVAAVYEDL ATKQKYLRNA IESARKAVEL SPNSIEFGHF YANLLYEAAN EGKREYEEVV QECHRALSIE YPIDPARESL QDETQLKILT PEARIAHFQD 0201: ELRSLIQKSN IYSLSTWMQT LGNGEEKFRL IPLRRMAEDP IESNLIQSRR PNEIKKSTKT NEERRKEIEV RVAAHRLLQQ KSESSPSENV EAVNNKGSDS 0301: ALAAGPRSGE RRKHGNARKN GSTADRRDRV RSYWDSLSKE MKKEFLRVKF SDLKSHFSGS KDGQAYEIVS EALSFCEANK TWRFWACCRC SQNFIESEAH 0401: MHHIVQAHMG NVLPKMQMVL PQIVDTERID MLFKSPWKPL DLSATLKLLR SQQKIQNSEF DEFHSGDNMD GGDDCFKDAW NDTTPDGDTC NGWNENESEE 0501: EVKLSIAFPP PDGWPISDDP ERAKLLEKIR AAFEQLIRHK YLAASHHDKV IQFTLDELQN LPSVSQFLNR GLNKSPLCIC FLGASHLSKI LKFLQDLSQA 0601: CGLSRYSEQS NPHDEINFGD LGREVTEEIL LDSEDSCLLM DEKLLGTECI QEKYMGSAFN NVTIASSGDI ANGNDVSSGA DGFLSWIFTG PSSEEQVVSW 0701: MRTKEDKTNQ GLEIMQHLEK EFYHLQNLCE RKCEHLSYEG ALQTVEDLCL EEGRKRETSA EFTHESYETV LRKRREELNE SDHELLFISS RFELDAITNV 0801: LKDAETLNHN QFGYEESYGC TSSQLRDLES GEADEWGIKD SLHEADSFIE IAIQKQKEQL SAELSRIDAQ MMRNVTGMQQ LELKLGPVSS NDYQIVLLPL 0901: VKSYMRAHLE ALAEKDATEK SDAAREALLV ELALDSKKEA RGRNDNSKNT LEKSKDKKKI KDTRKVKDMK ATIGSDHRSN ADSVEHSPLP VAPVGDHSEA 1001: DIVSEAVEAL KEEEEEYKRQ IELEEEERKL EKTLEYQRRI EDEAKEKHMA EQQKKYSSSV PMNVAKTVYN GCTDNEVDYL VLQGQEKSIN QEKRNGRLDD 1101: LEGASVNTNG VFPSTNHSAI SDTAKVQNVK SQKVPNGTAM QAGIFQSDQR TGRRTRRQKA SNKLADGKYP VTPPETENSK SQLSGTNGER HSETLRNNGD 1201: VGTKTLRQLQ AEDDDEERFQ ADMQRAVLQS LDVYQGGRNM ASCLRTPLEV NNDGGLSDDT MESRSSTGVT IFGTGLQNEV GEYNCFLNVI IQSLWNLELF 1301: RAEFLRSSTR EHHHVGDPCV VCSLYEIFTA LSAASSEKQN EPVAPSSLRI ALSNLYPDSS FFQEAQMNDA SEVLAVIFDC LHRSFAQSSS VSDVDSSDSN 1401: CTGSWDCANR TCIAHSLFGM DIFEQLNCYS CGLESRHLKY TSFFHNINAS ALRTMKVTCA ENSFDELLNL VEMNHQLACD PETGGCGKLN HIHHILTTPP 1501: HVFTTVLGWQ NTCETVEDIA ATLAALNTEI DISIMYRGLD PKSTYSLVSV VCYYGQHYHC FAHSREHDQW IMYDDKTVKV IGSWIDVLSM CERGHLQPQV 1601: LLYERR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)