AT1G79280.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : nuclear pore anchor | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a 237-kDA protein with similarity to vertebrate Tpr, a long coiled-coil proteins of nuclear pore inner basket filaments. It is localized to the inner surface of the nuclear envelope and is a component of the nuclear pore-associated steps of sumoylation and mRNA export in plants. Mutations affect flowering time regulation and other developmental processes. Probably acts in the same pathway as ESD4 in affecting flowering time, vegetative and inflorescence development. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
nuclear pore anchor (NUA); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: poly(A)+ mRNA export from nucleus, stamen development, negative regulation of protein sumoylation, negative regulation of flower development; LOCATED IN: cytosol, nuclear envelope, nucleolus, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide, MLP1/MLP2-like (InterPro:IPR012929); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29819176..29832809 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 237053.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.93 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2093 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPLFMPDEEL ARLSSDAASV VAERADEYIR KIYAELDSVR AKADAASITA EQTCSLLEQK YLSLSQDFSS LESQNAKLQS DFDDRLAELA QSQAQKHQLH 0101: LQSIEKDGEV ERMSTEMSEL HKSKRQLMEL LEQKDAEISE KNSTIKSYLD KIVKLTDTSS EKEARLAEAT AELARSQAMC SRLSQEKELT ERHAKWLDEE 0201: LTAKVDSYAE LRRRHSDLES EMSAKLVDVE KNYIECSSSL NWHKERLREL ETKIGSLQED LSSCKDAATT TEEQYTAELF TANKLVDLYK ESSEEWSRKA 0301: GELEGVIKAL EARLSQVESS YKERLDKEVS TKQLLEKENG DLKQKLEKCE AEIEKTRKTD ELNLIPFSNF TRRVDNSGTS NMIEESQAVI SKVPAGVSGT 0401: ALAASLLRDG WSLAKIYEKY QEAVDAMRHE QLGRKEAEMI LQRVLSELEE KAGFIQEERG EYERVVEAYC LVNQKLQDSV SEQSNMEKFI MELKADLRRR 0501: ERENTLLQKD ISDLQKQVTI LLKECRDVQL RCGAARDDDE DDYPLLSDVE MEMESEADKI ISEHLLKFKD INGLVEQNVK LRNLVRSLSE QIESRETELK 0601: ETFEVDLKNK TDEASAKVAT VLKRAEEQGQ MIESLHTSVA MYKRLYEEEQ KLHSSDSRSS DLSPAVVPGR KNFLHLLEDS EEATKRAQEK AFERIRILEE 0701: DFAKARSEVI AIRSERDKLA MEANFAREKL EGIMKESERK REEMNSVLAR NIEFSQLIID HQRKLRESSE SLHAAEEISR KLSMEVSVLK QEKELLSNAE 0801: KRASDEVSAL SQRVYRLQAT LDTVQSTEEV REETRAAERR KQEEHIKQLQ REWAEAKKEL QEERSNARDF TSDRNQTLNN AVMQVEEMGK ELANALKAVS 0901: VAESRASVAE ARLSDLEKKI RSSDPKTLDM DSGGIVSLSD KEMSIELRTA KEEIEKLRGE VESSKSHMLQ YKSIAQVNET ALKQMESAHE NFRLEAEKRQ 1001: RSLEAELVSL RERVSELEND CIQKSEQLAT AAAGKEDALL SASAEIASLR EENLVKKSQI EAMNIQMSTL KNDLETEHEK WRVAQRNYER QVILLSETIQ 1101: ELTKTSQALA ALQEEASELR KLADARGIEN SELNAKWSEE KLMLEQQKNL AEKKYHELNE QNKLLHSRLE AKHLNSAEKN SRSGTISSGS TDSDHLEDSG 1201: LQRVVHYLRR TKEIAETEIS LMRQEKLRLQ SQLESALKMA ESARGSLTAE RASTRASLLT DDGIKSLQLQ VSEMNLLRES NMQLREENKH NFEKCQEMRE 1301: VAQKARMESE NFENLLKTKQ TELDLCMKEM EKLRMETDLH KKRVDELRET YRNIDIADYN RLKDEVRQLE EKLKAKDAHA EDCKKVLLEK QNKISLLEKE 1401: LTNCKKDLSE REKRLDDAQQ AQATMQSEFN KQKQELEKNK KIHYTLNMTK RKYEKEKDEL SKQNQSLAKQ LEEAKEEAGK RTTTDAVVEQ SVKEREEKEK 1501: RIQILDKYVH QLKDEVRKKT EDLKKKDEEL TKERSERKSV EKEVGDSLTK IKKEKTKVDE ELAKLERYQT ALTHLSEELE KLKHADGNLP EGTSAVQVLS 1601: GSILNDQAAA YVSAVEYFER VARSIASNSQ VSTKPTDMVT EPSSGIPAAE PSTMTRVPSS TPLIKSPVAT TQQLPKVASD NKEKRLISQK PSTEFRRPSG 1701: RRIVRPQLVK PEESPKVDVD MPEAEGTGDE GKQPAAHEPE SQVTTSVRPV QTLVRKRQAD SLVSEPQQDS LTQGETSSEI APPASKKAKG SESHPDTSEG 1801: ENLAKEPAID ELMDATTTTD GDNEETEAEN AEEKTEEYVE AQQDNEADEP VEESPTETET IPTEEESRDQ TEEENQEPLT DMESDKEEGE LDLDTLEDLE 1901: EGTDVASMMR SPEKEEVQPE TLATPTQSPS RMETAMEEAE TTIETPVEDD KTDEGGDAAE EAADIPNNAN DQQEAPETDI KPETSAATTS PVSTAPTTSS 2001: TLASAITSSG APETEDPKRA PSPGGGSSTI VTLADRAQMK RRERIANIVV SRAPNPATRG ARGRTVNLRG GGRLLPRGGR APRGGRGQSP SPP |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)