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AT1G08600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATRX; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346; Bacteria - 7271; Metazoa - 9089; Fungi - 4970; Plants - 2206; Viruses - 434; Other Eukaryotes - 7342 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1317-MONOMERBioCyc:ARA:GQT-1318-MONOMERBioCyc:ARA:GQT-1319-MONOMERBioCyc:ARA:GQT-1320-MONOMER
EC:3.6.4.-eggNOG:COG0553eggNOG:KOG1015EMBL:AC003981
EMBL:CP002684EMBL:U75593EnsemblPlants:AT1G08600EnsemblPlants:AT1G08600.1
EnsemblPlants:AT1G08600.2EnsemblPlants:AT1G08600.3EnsemblPlants:AT1G08600.4entrez:837382
Gene3D:3.40.50.300GeneID:837382Genevisible:F4HW51GO:GO:0000781
GO:GO:0003677GO:GO:0004386GO:GO:0005524GO:GO:0005634
GO:GO:0006281GO:GO:0006351GO:GO:0006355GO:GO:0016568
GO:GO:0046872hmmpanther:PTHR10799hmmpanther:PTHR10799:SF350HOGENOM:HOG000084872
InterPro:IPR000330InterPro:IPR001650InterPro:IPR014001InterPro:IPR025766
InterPro:IPR027417KEGG:ath:AT1G08600KO:K10779ncoils:Coil
OMA:CTICTEMPaxDb:F4HW51Pfam:PF00176Pfam:PF00271
Pfscan:PS51192Pfscan:PS51194Pfscan:PS51533PIR:F86218
PIR:T00713PRIDE:F4HW51PRO:PR:F4HW51PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51533ProteinModelPortal:F4HW51Proteomes:UP000006548
RefSeq:NP_001184937.1RefSeq:NP_001184938.1RefSeq:NP_001184939.1RefSeq:NP_172336.4
SMART:SM00487SMART:SM00490SMR:F4HW51STRING:3702.AT1G08600.2
SUPFAM:SSF52540TAIR:AT1G08600tair10-symbols:ATRXtair10-symbols:CHR20
UniGene:At.10206UniProt:F4HW51
Coordinates (TAIR10) chr1:+:2724562..2733431
Molecular Weight (calculated) 165924.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.61
Length 1458 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD
0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP
0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD
0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ
0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL
0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD
0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV
0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK
0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV
0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM
1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL
1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII
1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL
1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK
1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)