AT1G08600.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ATRX; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 31658 Blast hits to 23484 proteins in 2032 species: Archae - 346; Bacteria - 7271; Metazoa - 9089; Fungi - 4970; Plants - 2206; Viruses - 434; Other Eukaryotes - 7342 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:2724562..2733431 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 165924.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 1458 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
0001: MEANEESLKG KIEKLEGKEV IVESKEDEMD IIIEENREAE QEVMEVKARD GRGEQNDVLM EENNNQGEQK DEEMQDASSR SESSDFNSDE DEQILSRRDD 0101: ELDLEKPLSE EEIDELISDL LAVESKAAEA QEALEKESLS KVESEVREEL AQALRGDELD EAVAAEMMTF KDEWEATLDE LETESATLLE QLDGAGIELP 0201: KLYEMIESQA PNGCYTEAWK QRAHWVGTQV TKETVESLAN AERFLHTHRP VRKRHGKLLE EGASGFLEKK LADGAVKESL AGTSELDWSS LNKVFSEKRD 0301: ESVSFGSKQW ASVYLASTPH QAAAMGLEFP GVNEVEEIEE IDASLADPFL ADAIDNEREL ALTEEQKTNY IRVKEEDDIT CDRVLQLRLK RKRRKKRSKQ 0401: VIRCAAENMD DDSVYLDGNN TTPNFAKDQV KSPETSTQVH NSEVNIEENG NFSNSDVDKM TPSTHINVDA KRDDSQNPAN NFRCTACNKV AVEVHSHPLL 0501: EVIVCMDCKR SIEDRVSKVD DSLERHCEWC GHIADLIDCR TCEKLFCASC IKRNIGEEYM SEAQSSGWDC CCCSPIPLQR LTLELEKAMR DKKSIELSSD 0601: SSSDSSSDNN SVDTDADVNV TISSKKKSKK KIRRIIDDAE LGKDTRTKIA IEKARQERLR SLQFSARYKT ISSMGDVKSI PEGAEVEVLG DAHSGYIVNV 0701: VREIGEEAVR VPRSISAKLK VHQVTGIRFM WENIIQSISR VKSGDKGLGC ILAHTMGLGK TFQVIAFLYT AMRCVDLGLK TALIVTPVNV LHNWRSEFEK 0801: WMPSEVKPLR IFMLGDVSRY KFFYERNFWG VKDLNAARGI CNALRDGPDI LVCDEAHIIK NTKADTTQAL KQVKCQRRIA LTGSPLQNNL MEYYCMVDFV 0901: REGFLGSSPE FRNRFQNPIE NGQHMNSTAE DVKIMNQRSH ILYEQLKGFV QRMDMNVVKK DLPPKTVFVI SVKLSPLQRI LYQRFLELYG FSDGRTDERM 1001: RKNFFAAYQV LAQILNHPGI PQLRSEDSKN GRRGSIVDIP DDCSSDENID YNMVTGEKQR TMNDLQDKVD GYLQKDWWVD LLQKNNYKVS DFSGKMILLL 1101: DILSMSADVG DKALVFSQSI PTLDLIELYL SRVPRHGKQG KFWKKGKDWY RIDGKTESSE RQKLVDRFNE PDNKRVKCTL ISTRAGSLGI NLYAANRVII 1201: VDGSWNPTYD LQAIFRAWRY GQKKPVFAYR LMARGTIEEK IYKRQVTKEG LAARVVDRQQ VHRTISKEEM LHLFEFDDDD EKSEAVTEIS KQNEAGHSNL 1301: VEQAILWTKK ATLSRVGGDK LMENLLQRHG PNWISSFHEH ETLLQENEEE RLTKEEKDMA WEVYRRALEW EEVQRVPFSE SPVVPKPSPS TQTEPLPQPK 1401: GFNRSRFVNR NCTRIAHQLT LISQGLKVGS STVCGECGRV IRWEDVIPAS KLSAVIVN |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)