AT2G39260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding;RNA binding | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding;RNA binding; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), Up-frameshift suppressor 2 (InterPro:IPR007193), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 8683 Blast hits to 5464 proteins in 545 species: Archae - 34; Bacteria - 610; Metazoa - 3010; Fungi - 1047; Plants - 271; Viruses - 134; Other Eukaryotes - 3577 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:16392288..16399588 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 133969.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1181 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDHPEDESHS EKQDDEEALA RLEEIKKSIE AKLTLRQNNL NPERPDSAYL RTLDSSIKRN TAVIKKLKQI NEEQREGLMD DLRGVNLSKF VSEAVTAICE 0101: AKLKSSDIQA AVQICSLLHQ RYKEFSASLT QGLLKVFFPG KSAEDLEADK NSKAMKKRST LKLLLELYYV GVIEDSNIFI NIIKDLTSVE QLKDRDTTQT 0201: NLTLLTSFAR QGRIFLGLPI SGQDEDFFKG LDVTADQKKS FKKAFNTYYD ALADLLQSEH KLLLQMEKEN AKLVNAKGEL SEDSASSYEK LRKSYDHLYR 0301: NISSLAEALD MQPPVMPEDG TTRLTAGDEA SPSGTVKDTS VPEPIWDDED TKTFYECLPD LRAFVPAVLL GEAEPKSNEQ SAKAKEKLSE SSSEVVENQQ 0401: TTEDTTEVSA DSASMDDRSN AEQPKEKEEV EKEKAKDTKK EKGKEKDSEK KMEHEKEKGK SLDVANFERL LQRLPGCVSR DLIDQLTVEY CYLNSKTNRK 0501: KLVKALFNVP RTSLELLAYY SRMVATLASC MKDIPSMLVQ MLEDEFNSLV HKKDQMNIET KIRNIRFIGE LCKFKIVPAG LVFSCLKACL DEFTHHNIDV 0601: ACNLLETCGR FLYRSPETTL RMTNMLDILM RLKNVKNLDP RQSTLVENAY YLCKPPERSA RISKVRPPLH QYVRKLLFSD LDKDSIANVL KQLRKLPWSE 0701: CEQYILKCFM KVHKGKYGQI HLIASLTSGL SRHHDEFVVA VVDEVLEEIR VGLELNEYGA QQKRLAHMRF LGELYNYEHV DSSVIFETLY LTLLYGHDTS 0801: EQEVLDPPED FFRVRMVIIL LETCGHYFDR GSSKKRLDQF LIHFQRYILS KGHLPLDIEF DLQDLFANLR PNMTRYSTID EVNAAILQLE EREHASSGDK 0901: VSIERHSDTK PSNKSSSDVI SSNGKSTAKD IRENGEAHGE ESDSDSGSGS VVRDGQNEEL DDGNHERGSE SGDGDDYDDG DGPGSDDDKF RVRQKVVTVD 1001: LEEQADFDQE LKALLQESME QRKLELRGRP ALNMTIPMSV FEGSGKDHHH FGRVVGENGE EVLDEENGEQ REVQVKVLVK RGNKQQTRQM LIPSDCALVQ 1101: STKQKEAAEL EEKQDIKRLV LEYNERDEEE ANGLGTQILN WTSGGSRGST RTGEGSGKSG GSRHRFYYHQ GGGGSYHARR K |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)