suba logo
AT3G11910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23645632 (2013): cytosol None
  • PMID:23645632 (2013): nucleus nuclear matrix
  • PMID:31520498 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin-specific protease 13 (UBP13); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 12 (TAIR:AT5G06600.1); Has 7915 Blast hits to 7124 proteins in 272 species: Archae - 0; Bacteria - 15; Metazoa - 3654; Fungi - 1255; Plants - 1604; Viruses - 7; Other Eukaryotes - 1380 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G11910-MONOMERBioCyc:ARA:GQT-2250-MONOMERBioGrid:5698EC:3.4.19.12
eggNOG:COG5077eggNOG:KOG1863EMBL:AC016795EMBL:AK226819
EMBL:AP002040EMBL:BT002760EMBL:CP002686EnsemblPlants:AT3G11910
EnsemblPlants:AT3G11910.1entrez:820364ExpressionAtlas:Q84WU2Gene3D:2.60.210.10
GeneID:820364Genevisible:Q84WU2GO:GO:0005829GO:GO:0006511
GO:GO:0009506GO:GO:0016579GO:GO:0036459hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF445HOGENOM:HOG000160240InParanoid:Q84WU2InterPro:IPR001394
InterPro:IPR002083InterPro:IPR008974InterPro:IPR018200InterPro:IPR024729
InterPro:IPR028889InterPro:IPR029346MEROPS:C19.A53ncoils:Coil
OMA:HENTIRDPaxDb:Q84WU2Pfam:PF00443Pfam:PF00917
Pfam:PF12436Pfam:PF14533Pfam:Q84WU2Pfscan:PS50144
Pfscan:PS50235PhylomeDB:Q84WU2PRIDE:Q84WU2PRO:PR:Q84WU2
PROSITE:PS00972PROSITE:PS00973PROSITE:PS50144PROSITE:PS50235
ProteinModelPortal:Q84WU2Proteomes:UP000006548Reactome:R-ATH-6781823Reactome:R-ATH-6782135
Reactome:R-ATH-6782210RefSeq:NP_187797.3scanprosite:PS00972scanprosite:PS00973
SMART:SM00061SMR:Q84WU2STRING:3702.AT3G11910.1SUPFAM:SSF49599
SUPFAM:SSF54001TAIR:AT3G11910tair10-symbols:UBP13UniGene:At.25337
UniProt:Q84WU2
Coordinates (TAIR10) chr3:-:3761758..3770290
Molecular Weight (calculated) 130656.00 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.66
Length 1115 amino acids
Sequence (TAIR10)
(BLAST)
0001: MTMMTPPPLD QQEDEEMLVP NPDLVEGPQP MEVAQTDPAA TAVENPPPED PPSLKFTWTI PMFTRLNTRK HYSDVFVVGG YKWRILIFPK GNNVDHLSMY
0101: LDVADAANLP YGWSRYSQFS LAVVNQVNNR YSIRKETQHQ FNARESDWGF TSFMPLSELY EPTRGYLVND TVLIEAEVAV RKVLDYWSYD SKKETGFVGL
0201: KNQGATCYMN SLLQTLYHIP YFRKAVYHMP TTENDAPTAS IPLALQSLFY KLQYNDTSVA TKELTKSFGW DTYDSFMQHD VQELNRVLCE KLEDKMKGTV
0301: VEGTIQKLFE GHHMNYIECI NVDYKSTRKE SFYDLQLDVK GCKDVYASFD KYVEVERLEG DNKYHAEGHD LQDAKKGVLF IDFPPVLQLQ LKRFEYDFMR
0401: DTMVKINDRY EFPLQLDLDR EDGRYLSPDA DKSVRNLYTL HSVLVHSGGV HGGHYYAFIR PTLSDQWYKF DDERVTKEDV KRALEEQYGG EEELPQNNPG
0501: FNNPPFKFTK YSNAYMLVYI RESDKDKIIC NVDEKDIAEH LRVRLKKEQE EKEDKRKYKA QAHLFTTIKV ARDDDITEQI GKNIYFDLVD HEKVRSFRIQ
0601: KQTPFQQFKE EVAKEFGVPV QLQRFWIWAK RQNHTYRPNR PLSPNEELQT VGQIREASNK ANNAELKLFL EIERGPDDLP IPPPEKTSED ILLFFKLYDP
0701: ENAVLRYVGR LMVKSSSKPM DIVGQLNKMA GFAPDEEIEL FEEIKFEPCV MCEQIDKKTS FRLCQIEDGD IICYQKPLSI EESEFRYPDV PSFLEYVQNR
0801: ELVRFRTLEK PKEDEFTMEL SKLHTYDDVV ERVAEKLGLD DPSKLRLTSH NCYSQQPKPQ PIKYRGVDHL SDMLVHYNQT SDILYYEVLD IPLPELQGLK
0901: TLKVAFHSAT KDEVIIHNIR LPKQSTVGDV INELKTKVEL SHQDAELRLL EVFFHKIYKI FPSTERIENI NDQYWTLRAE EIPEEEKNIG PNDRLIHVYH
1001: FTKEAGQNQQ VQNFGEPFFL VIHEGETLEE IKTRIQKKLH VPDEDFAKWK FASFSMGRPD YLLDTDVVYN RFQRRDVYGA WEQYLGLEHI DNAPKRAYAA
1101: NQNRHAYEKP VKIYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)