AT3G54670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Structural maintenance of chromosomes (SMC) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
TITAN8 (TTN8); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1); Has 200429 Blast hits to 91047 proteins in 3650 species: Archae - 2506; Bacteria - 36447; Metazoa - 81443; Fungi - 15311; Plants - 9097; Viruses - 946; Other Eukaryotes - 54679 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20235818..20243701 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143223.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.86 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1238 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPAIQSPSGK ILQLEMENFK SYKGHQLVGP FKDFTAIIGP NGSGKSNLMD AISFVLGVRT GQLRGSQLKD LIYAFDDRDK EQRGRKAFVR LVYQMDDGVE 0101: LRFTRSITSA GGSEYRIDNR VVNLDEYNGK LRSLGILVKA RNFLVFQGDV ESIASKNPKE LTGLLEEISG SEELKKEYEG LEEKKASAEE KAALIYQKKK 0201: TIGNEKKLKK AQKEEAEKHL RLQEELKALK RERFLWQLYN IENDIEKANE DVDSEKSNRK DVMRELEKFE REAGKRKVEQ AKYLKEIAQR EKKIAEKSSK 0301: LGKIQPELLR FKEEIARIKA KIETNRKDVD KRKKEKGKHS KEIEQMQKSI KELNKKMELF NKKRQDSSGK LPMLDSQLQD YFRLKEEAGM KTIKLRDEHE 0401: VLERQRRTDL EALRNLEENY QQLINRKNDL DEQIKRFKDR QGEIETSSSK YKNETTSLKT ELRALQEKHV NAREASAKLK TRIAELEDQL SDLTAERYEN 0501: ERDSRLTQAV ESLKRLFQGV HGRMTDLCRP NRKKYNLAVT VAMGRFMDAV VVEDENTGKD CIKYLKEQRL PPMTFIPLQS VRVKQVFERL RNLGGTAKLV 0601: FDVIQYPLHI SEVSKIYIFV LNYSTFDPEL EKAVLYAVGN TLVCDELEEA KVLSWSGERF KVVTVDGILL TKAGTMTGGT SGGMEAKSNK WDDKKIEGLK 0701: KNKEDFEQQL ENIGSIREMQ MKESEISGKI SGLEKKIQYA EIEKKSIKDK LPQLEQEERN IIEEIDRIKP ELSKAIARTE VDKRKTEMNK LEKRMNEIVD 0801: RIYKDFSQSV GVPNIRVYEE TQLKTAEKEA EERLELSNQL AKLKYQLEYE QNRDVGSRIR KIESSISSLE TDLEGIQKTM SERKETAVKI TNEINNWKKE 0901: MEECKQKSEE YEKEILDWKK QASQATTSIT KLNRQIHSKE TQIEQLISQK QEITEKCELE HITLPVLSDA MEEDDSDGPQ FDFSELGRAY LQERRPSARE 1001: KVEAEFRQKI ESKTSEIERT APNLRALDQY EAIQEKEKQV SQEFEAARKE EKQVADAFNT VKQKRYELFM EAFNHIASNI DKIYKQLTKS NTHPLGGTAY 1101: LNLENEDDPF LHGIKYTTMP PTKRFRDMEQ LSGGEKTVAA LALLFSIHRP SPFFILDEVD AALDNLNVAK VAKFIRSKSC QAARDNQDAE DGNGFQSIVI 1201: SLKDSFYDKA EALVGVYRDT ERSCSSTMSF DLRNYQES |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)