AT5G47690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : binding | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 16808 Blast hits to 11211 proteins in 698 species: Archae - 33; Bacteria - 718; Metazoa - 7012; Fungi - 1729; Plants - 1224; Viruses - 236; Other Eukaryotes - 5856 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19317899..19327014 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 181220.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.18 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||
| Length | 1605 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAQKPEEQLK ELGSKLDLAP VSKDSLLKLL KEAAVCLSEL EQSPPPAVLK SIQPFLDAVI KPEILNHQDK DVKLLVASCV SEITRITAPE APYSDNIMKD 0101: IFQLIVSAFA GLNDVSGPSF GRRVLILETV AKYRSCVVML DLECDDLVKE VFTTFLDVAR DDHPEIVFSS MQNIMIVLLE ESEDVQEHLL LILLSKLGRN 0201: RSDVRDAARR LAMKVIEHCA PKVESDIKQF LISSMSGDSR FSSSQIDYHE VIYDLYRCAP QALSGVAPYL TGELLADKLE TRLKVVGLVG ELFSLPGRVI 0301: SEEFDSIFLE FLKRLTDRVV EVRMAILDHI KDCLLSDPLR AEASQIISAL CDRLLDYDEN IRKQVVAVIC DVSVSALTSI PVDTMKLVAE RLRDKAILVK 0401: TYTMERLTEL FRVYCLRCAD GKVDTGDFNW IPGKILRCLY DKDFRSDTIE YILCSSLFPS DFSVRDKVKH WIQIFSGFDK VETKAFEKIL EQRQRIQQEM 0501: QRYLSIKQTQ QTADAPEIQK KILFGFRVMS RAFSDPPKTE QNFLILDQLK DANIWKILTN LLDPNTSITQ ASRIRDDMLK ILSEKHSLYD FLSTLSIKCS 0601: YLLFSKEYVK EILAEVSVRK SSKNTLGIQP CMDFLGLLAC FCPSLFDGAE EELISFLKDD DEMMKEGTLK ILAKAGGTIR ENLIVLASSV DLLLERICVE 0701: GNRKQAKYAV HALASITKDD GLKSLSVLYK RLVDMLEDKR YQPAVLQCLG CIAQIAMPVY ETRESEVVEF IRSKILKLKS ETVDDKKLSW DDKSEICQLK 0801: IYGIKTLVKS YLPFKDAQLR AGVDDLLGIL KNILSFGEVS EDLESSSVDK AHLRLAAAKA VLRLSRHWDD KIPIEIFHLT LKTPEIPFPT AKKIFLGKVH 0901: QYVKDRVLEM KYACSFLFDI TGSNVLESEE DKHNLADIIQ HSYQTKVRKI SAQTDANSVT LYPHHILPYL VHALAHHSCP DVEKCKDVKE YEMIYRQLYL 1001: IISMLLHKEE DGKTEDIDKE REYVPTIILI FHSIKQSEDV TDATKSKNSH AICELGLSII NHLTQKEPDL QGEITPVSLP PTLYKPSEKV EGDKSQVGEE 1101: KLWLADETVL LHFRALKLES HADASVIPQT SENEVMIDGE SDGNEIPLGK IVERLRAQGT KTRKGKKNKS VPAEDENGKN DVDVLKMVRE INLDHLQMLD 1201: KFESSNGHKH SPSERAEICQ RDQKGNKRNV GDATSVVSVP KRRRSSSGHS PYKFSNSGPK VQLKASEDEL HLESDMDKNV SLDSHDENSD QEKMLESISP 1301: RKRKKSLSSK LKITESDWAL TDVERSRSAG GGDSKLKSAS GSMKKRKNVS GLAKCSTKEN KLVNDELIGC RIEVWWPMDK RFYEGTVKSY DSTKQRHVIL 1401: YEDGDVEVLN LKKEQWELID TGGKTAKKSR TSKGNSKKKR SSGSKPKNPD GVQRDEDPVT TTPKGKRTPK KNLKQLHPKD TPKSLSLEHE KVESRNKKRR 1501: SSALPKTEYS GEAGEEKSES EGKSLKEGED DEEVVNKEED LQEAKTESSG DAEGKEAEHD DSDTEGKQEN NEMEREAEEN AETSDNETLG AWKSKVGKSI 1601: SRTAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)