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AT5G47690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14671022 (2004): mitochondrion
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 16808 Blast hits to 11211 proteins in 698 species: Archae - 33; Bacteria - 718; Metazoa - 7012; Fungi - 1729; Plants - 1224; Viruses - 236; Other Eukaryotes - 5856 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQW7eggNOG:KOG1525EMBL:CP002688EnsemblPlants:AT5G47690
EnsemblPlants:AT5G47690.1entrez:834820ExpressionAtlas:B6EUB3Gene3D:1.25.10.10
GeneID:834820Gramene:AT5G47690.1hmmpanther:PTHR12663hmmpanther:PTHR12663:SF0
HOGENOM:HOG000064635InterPro:IPR011989InterPro:IPR016024iPTMnet:B6EUB3
PaxDb:B6EUB3PhylomeDB:B6EUB3PRIDE:B6EUB3ProteinModelPortal:B6EUB3
Proteomes:UP000006548Reactome:R-ATH-2468052Reactome:R-ATH-2470946RefSeq:NP_199580.3
SMR:B6EUB3STRING:3702.AT5G47690.3SUPFAM:SSF48371SUPFAM:SSF63748
TAIR:AT5G47690UniGene:At.44744UniProt:B6EUB3
Coordinates (TAIR10) chr5:+:19317899..19327014
Molecular Weight (calculated) 181220.00 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.47
Length 1605 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAQKPEEQLK ELGSKLDLAP VSKDSLLKLL KEAAVCLSEL EQSPPPAVLK SIQPFLDAVI KPEILNHQDK DVKLLVASCV SEITRITAPE APYSDNIMKD
0101: IFQLIVSAFA GLNDVSGPSF GRRVLILETV AKYRSCVVML DLECDDLVKE VFTTFLDVAR DDHPEIVFSS MQNIMIVLLE ESEDVQEHLL LILLSKLGRN
0201: RSDVRDAARR LAMKVIEHCA PKVESDIKQF LISSMSGDSR FSSSQIDYHE VIYDLYRCAP QALSGVAPYL TGELLADKLE TRLKVVGLVG ELFSLPGRVI
0301: SEEFDSIFLE FLKRLTDRVV EVRMAILDHI KDCLLSDPLR AEASQIISAL CDRLLDYDEN IRKQVVAVIC DVSVSALTSI PVDTMKLVAE RLRDKAILVK
0401: TYTMERLTEL FRVYCLRCAD GKVDTGDFNW IPGKILRCLY DKDFRSDTIE YILCSSLFPS DFSVRDKVKH WIQIFSGFDK VETKAFEKIL EQRQRIQQEM
0501: QRYLSIKQTQ QTADAPEIQK KILFGFRVMS RAFSDPPKTE QNFLILDQLK DANIWKILTN LLDPNTSITQ ASRIRDDMLK ILSEKHSLYD FLSTLSIKCS
0601: YLLFSKEYVK EILAEVSVRK SSKNTLGIQP CMDFLGLLAC FCPSLFDGAE EELISFLKDD DEMMKEGTLK ILAKAGGTIR ENLIVLASSV DLLLERICVE
0701: GNRKQAKYAV HALASITKDD GLKSLSVLYK RLVDMLEDKR YQPAVLQCLG CIAQIAMPVY ETRESEVVEF IRSKILKLKS ETVDDKKLSW DDKSEICQLK
0801: IYGIKTLVKS YLPFKDAQLR AGVDDLLGIL KNILSFGEVS EDLESSSVDK AHLRLAAAKA VLRLSRHWDD KIPIEIFHLT LKTPEIPFPT AKKIFLGKVH
0901: QYVKDRVLEM KYACSFLFDI TGSNVLESEE DKHNLADIIQ HSYQTKVRKI SAQTDANSVT LYPHHILPYL VHALAHHSCP DVEKCKDVKE YEMIYRQLYL
1001: IISMLLHKEE DGKTEDIDKE REYVPTIILI FHSIKQSEDV TDATKSKNSH AICELGLSII NHLTQKEPDL QGEITPVSLP PTLYKPSEKV EGDKSQVGEE
1101: KLWLADETVL LHFRALKLES HADASVIPQT SENEVMIDGE SDGNEIPLGK IVERLRAQGT KTRKGKKNKS VPAEDENGKN DVDVLKMVRE INLDHLQMLD
1201: KFESSNGHKH SPSERAEICQ RDQKGNKRNV GDATSVVSVP KRRRSSSGHS PYKFSNSGPK VQLKASEDEL HLESDMDKNV SLDSHDENSD QEKMLESISP
1301: RKRKKSLSSK LKITESDWAL TDVERSRSAG GGDSKLKSAS GSMKKRKNVS GLAKCSTKEN KLVNDELIGC RIEVWWPMDK RFYEGTVKSY DSTKQRHVIL
1401: YEDGDVEVLN LKKEQWELID TGGKTAKKSR TSKGNSKKKR SSGSKPKNPD GVQRDEDPVT TTPKGKRTPK KNLKQLHPKD TPKSLSLEHE KVESRNKKRR
1501: SSALPKTEYS GEAGEEKSES EGKSLKEGED DEEVVNKEED LQEAKTESSG DAEGKEAEHD DSDTEGKQEN NEMEREAEEN AETSDNETLG AWKSKVGKSI
1601: SRTAI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)