AT1G65440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : global transcription factor group B1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
global transcription factor group B1 (GTB1); FUNCTIONS IN: transcription elongation regulator activity, hydrolase activity, acting on ester bonds, RNA binding; INVOLVED IN: chromatin assembly or disassembly, transcription initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), SH2 motif (InterPro:IPR000980), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Transcription elongation factor Spt6 (InterPro:IPR017072); BEST Arabidopsis thaliana protein match is: Transcription elongation factor Spt6 (TAIR:AT1G63210.1); Has 154550 Blast hits to 61131 proteins in 3458 species: Archae - 353; Bacteria - 39994; Metazoa - 50717; Fungi - 13479; Plants - 12820; Viruses - 1975; Other Eukaryotes - 35212 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24306945..24314327 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 185044.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1647 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MARNAISDDE EDHELEDDDG EPVHGDPAEH DENDDEEDDD DVGNEYENDG FIVNDEDEEE EEEEDEERKD SDEERQKKKK KRKKKDEGLD EDDYLLLQDN 0101: NVKFKKRQYK RLKKAQREQG NGQGESSDDE FDSRGGTRRS AEDKIKDRLF DDVDVDDPPD DVGDEEDLVV EEDVVGSEDE MADFIVDEDD EHGPPKRGNS 0201: KKKKYRQGSD ITAMRDANEI FGDVDELLTI RKKGLASNQR MERRLEDEFE PTVLSEKYMT GNDDEIRQLD IPERMQISEE STGSPPVDEI SIEEESNWIY 0301: AQLASQLRES DGTFDGRGFS VNKDDIAKFL ELHHVQKLEI PFIAMYRKEQ CRSLLDTGDF DGANQGKKPE TKWHKVFWMI HDLDKKWLLL RKRKMALHGY 0401: YTKRYEEESR RVYDETRLNL NQYLFESVIK SLKVAETERE VDDVDSKFNL HFPPGEIGVD EGQYKRPKRK SQYSICSKAG LWEVANKFGY SAEQLGLALS 0501: LEKLVDELED AKETPEEMAK NFVCAMFENS LAVLKGARHM AAVEISCEPS VKKYVRGIYM ENAVVSTSPT ADGNTVIDSF HQFSGIKWLR EKPLSKFEGA 0601: QWLLIQKGEE EKLLQVTFKL PENYMNRLIS DCNEHYLSVG VSKYAQLWNE QRKLILEDAL HAFLLPSMEK EARSLLTSRA KSRLLSEYGQ ALWNKVSAGP 0701: YQKKEMDINL DEEAAPRVMA CCWGPGKPPN TFVMLDSSGE VLDVLYAGSL TSRSQNVNDQ QRKKSDQDRV LKFMMDHQPH VVALGAVNLS CTRLKDDIYE 0801: VIFQMVEEKP RDVGHGMDDL SIVYVDESLP RLYENSRISG EQLPQQSGNV RRAVALGRYL QNPLAMVATL CGPGREILSW KLHPLENFLQ LDEKYGMVEQ 0901: VMVDITNQVG IDINLAASHD WFFSPLQFIS GLGPRKAASL QRSLVRAGSI FVRKDLIMHG LGKKVFVNAA GFLRIRRSGL AASSSQFIDL LDDTRIHPES 1001: YSLAQELAKD IYDEDVRGDS NDDEDAIEMA IEHVRDRPAS LRKVVLDEYL ASKKRENKKE TYSNIIRELS CGFQDWRIPF KEPSPDEEFY MISGETEDTI 1101: AEGRIVQASV RRLQNGRAIC VLDSGLTGML MKEDFSDDGR DIVDLADQLK EGDILTCKIK SIQKQRYQVF LICKESEMRN NRHQHNQNVD AYYHEDRNSL 1201: QLVKEKARKE KELVRKHFKS RMIVHPRFQN ITADQATEYL SDKDFGESIV RPSSRGLNFL TLTLKIYDGV YAHKEIAEGG KENKDITSLQ CIGKTLTIGE 1301: DTFEDLDEVM DRYVDPLVSH LKTMLNYRKF RKGTKSEVDD LLRIEKGENP SRIVYCFGIS HEHPGTFILS YIRSTNPHHE YIGLYPKGFK FRKRMFEDID 1401: RLVAYFQRHI DDPLQESAPS IRSIAAKVPM RSPADHGSSG GSGWGSSQSE GGWKGNSDRS GSGRGGEYRN GGGRDGHPSG APRPYGGRGR GRGRGRRDDM 1501: NSDRQDGNGD WGNNDTGTAD GGWGNSGGGG WGSESAGKKT GGGSTGGWGS ESGGNKSDGA GSWGSGSGGG GSGGWGNDSG GKKSSEDGGF GSGSGGGGSD 1601: WGNESGGKKS SADGGWGSES GGKKSDGEGG WGNEPSSRKS DGGGGGW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)