AT4G33200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : myosin, putative | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Myosin-like proteins | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
XI-I; FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), ATPase, AAA+ type, core (InterPro:IPR003593), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 21143 Blast hits to 15193 proteins in 1417 species: Archae - 214; Bacteria - 1306; Metazoa - 12806; Fungi - 1491; Plants - 1144; Viruses - 22; Other Eukaryotes - 4160 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:16002768..16014792 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 173372.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1522 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MRNCLPMELN LRKGDKVWVE DKDLAWIAAD VLDSFDNKLH VETSTGKKVF VSPEKLFRRD PDDEEHNGVD DMTKLTYLHE AGVLYNLQRR YALNDIYTYT 0101: GSILIAVNPF KKLPHLYNGH MMEQYMGAPF GELSPHVFAV SDVAYRAMID DSRSQSILVS GESGAGKTET TKLIMQYLTF VGGRATDDDR SVEQQVLESN 0201: PLLEAFGNAK TVRNDNSSRF GKFVEIQFDT NGRISGAAIR TYLLERSRVV RITDPERNYH CFYQLCASGN DAEKYKLSNP RQFHYLNQSK TYELEGVSSA 0301: EEYKNTRRAM DIVGISQDEQ EGIFRTLAAI LHLGNVEFSS GREHDSSVVK DPESRHHLQM AADLFKCDAN LLLASLCTRS ILTREGIIIK ALDPNAAVTS 0401: RDTLAKTVYA HLFDWLVDKI NKSVGQDPES RFQIGVLDIY GFECFKNNSF EQFCINFANE KLQQHFNEHV FKMEQDEYRK EEINWSYIEF IDNQDVLDLI 0501: EKKPIGVIAL LDEACMFPRS THESFSMKLF QNFRFHPRLE KPKFSETDFT LSHYAGKVTY QTEAFLDKNR DYTIVEHCNL LSSSKCPFVA GIFPSAPEES 0601: TRSSYKFSSV SSRFKQQLQA LMETLSKTEP HYVRCVKPNS LNRPQKFESL SVLHQLRCGG VLEAVRISLA GYPTRRNYSD FVDRFGLLAP EFMDESNDEQ 0701: ALTEKILSKL GLGNYQLGRT KVFLRAGQIG ILDSRRAEVL DASARLIQRR LRTFVTHQNF ISARASAISI QAYCRGCLSR NAYATRRNAA AAVLVQKHVR 0801: RWLSRCAFVK LVSAAIVLQS CIRADSTRLK FSHQKEHRAA SLIQAHWRIH KFRSAFRHRQ SSIIAIQCRW RQKLAKREFR KLKQVANEAG ALRLAKTKLE 0901: KRLEDLEWRL QLEKRLRTSG EEAKSSEISK LQKTLESFSL KLDAARLATI NECNKNAVLE KQLDISMKEK SAVERELNGM VELKKDNALL KNSMNSLEKK 1001: NRVLEKELLN AKTNCNNTLQ KLKEAEKRCS ELQTSVQSLE EKLSHLENEN QVLMQKTLIT SPERIGQILG EKHSSAVVPA QNDRRSVFET PTPSKHIMPF 1101: SHSLSESRRS KLTAERNLEN YELLSRCIKE NLGFNDDKPL AACVIYKCLL HWRAFESEST AIFNIIIEGI NEALKGGDEN GVLPYWLSNA SALLCLLQRN 1201: LRSNSFLNAS AQRSGRAAYG VKSPFKLHGP DDGASHIEAR YPALLFKQQL TACVEKIYGL IRDNLKKELS PLLGSCIQAP KASRGIAGKS RSPGGVPQQS 1301: PSSQWESILK FLDSLMSRLR ENHVPSFFIR KLVTQVFSFI NLSLFNSLLL RRECCTFSNG EYVKSGISEL EKWIANAKEE FAGTSWHELN YIRQAVGFLV 1401: IHQKKKKSLD EIRQDLCPVL TIRQIYRIST MYWDDKYGTQ SVSSEVVSQM RVLVDKDNQK QTSNSFLLDD DMSIPFSAED IDKAIPVLDP SEIEPPKFVS 1501: EYTCAQSLVK KPSIASTSKQ II |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)