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AT5G15540.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHD finger family protein
Curator
Summary (TAIR10)
Encodes Adherin SCC2. Essential for viability. Required for normal seed development. Plays a role in the establishment of sister-chromatid cohesion and chromosome organization during meiosis.
Computational
Description (TAIR10)
EMBRYO DEFECTIVE 2773 (EMB2773); FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: centromere complex assembly, sister chromatid cohesion, embryo development ending in seed dormancy, meiotic sister chromatid cohesion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-like helical (InterPro:IPR011989), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Armadillo-type fold (InterPro:IPR016024), Zinc finger, PHD-finger (InterPro:IPR019787); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XP32eggNOG:KOG1020EMBL:CP002688EMBL:EF520004
EnsemblPlants:AT5G15540EnsemblPlants:AT5G15540.1entrez:831407ExpressionAtlas:A5HEI1
Gene3D:1.25.10.10Gene3D:3.30.40.10GeneID:831407GO:GO:0003682
GO:GO:0007062GO:GO:0007064GO:GO:0008270GO:GO:0009793
GO:GO:0010468GO:GO:0034508GO:GO:0051177Gramene:AT5G15540.1
hmmpanther:PTHR21704HOGENOM:HOG000276888InterPro:IPR001965InterPro:IPR011011
InterPro:IPR011989InterPro:IPR013083InterPro:IPR016024InterPro:IPR019786
InterPro:IPR019787InterPro:IPR024986InterPro:IPR026003InterPro:IPR033031
OMA:LHRVQDPPANTHER:PTHR21704Pfam:PF12765Pfam:PF12830
Pfscan:PS50016PhylomeDB:A5HEI1PROSITE:PS01359PROSITE:PS50016
Proteomes:UP000006548Reactome:R-ATH-2470946RefSeq:NP_197058.2scanprosite:PS01359
SMART:SM00249STRING:3702.AT5G15540.1SUPFAM:SSF48371SUPFAM:SSF57903
TAIR:AT5G15540tair10-symbols:ATSCC2tair10-symbols:EMB2773tair10-symbols:SCC2
UniGene:At.31788UniProt:A5HEI1
Coordinates (TAIR10) chr5:-:5047887..5057411
Molecular Weight (calculated) 206770.00 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.25
Length 1846 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSNPSSSGLG SSSGLTHFGI GLANTVQSEV TPYLPLPSLP IFCGAAEPGE FKLFDEVGQG SGYRSLDRSE ILAQSSRIAN MLHETDVSYL DLRNEARAPD
0101: CNSGEHFQLY DLVLRCNPGA FEYVTPGPTC DPLFTNEGPQ KIISEPSVPV KMQRQTDTHL ARSIEPEPVK RVLRPNHVED HSWQHETLTN QSPKDVTAYD
0201: SRPETITMNE LSASKKPKGK KKRKDDLSSV QPDPSVLQES IVQNFCEMLE DFCGRAEVPG DDRDEAEWSS VPVDEVRVLI NELMTIRSKM LLHMVPVDIL
0301: SRLLRTLDHQ IHRAEGLSIY SEHSDSDSVL LVLGALESIH ASLAVMANSD MPKQLYKEEI IERILEFSRH QMMAVMSAYD PSYRTGSKPA ENLAFEGDDD
0401: DDNPDHDMGS ASKRRRIVKN SKVKKASVNR ISGAVNTALQ KLCTILGLLK DLLLVERLSD SCILQLLKTS ITTFLVENIQ ILQLKAISLI GGIYNSYSQH
0501: RTYVIDEISQ LLWKLPSSKR ALRAYLLPDE EQRQIQMVTA LLIQLVHNST SLPETSRQAA SGNSILETSV DVGYLTKCHE AATETCCLFW TRVLERFTSF
0601: KGQDASEIKL IIENLVMDLL TALNLPEYPS VSPILEVLCV ILLHNAGLKS KDVSARIMAI ELLGTIAARL KRDAVLCSKD RFWTLLESDS EISVDQVCTK
0701: DCTFCLGKRA GNLLVCQICQ RRFHGDCLGL KELDISSRNW HCPLCVCKRQ LLVLQSYCKT DTKGTGKLES EESIENPSMI TKTEVVQQML LNYLQDVGSA
0801: DDVHTFICWF YLCLWYKDVP KSQNKFKYYI ARLKAKSIIR NSGATTSFLT RDAIKQITLA LGMNSSFSRG FDKILNMLLA SLRENAPNIR AKALRAVSII
0901: VEADPEVLCD KRVQLAVEGR FCDSAISVRE AALELVGRHI ASHPDVGIKY FEKVAERIKD TGVSVRKRAI KIIRDMCTSN PNFSEFTSAC AEILSRISDD
1001: ESSVQDLVCK TFYEFWFEEP PGHHTQFASD ASSIPLELEK KTKQMVGLLS RTPNQQLLVT IIKRALALDF FPQAAKAAGI NPVALASVRR RCELMCKCLL
1101: EKILQVEEMS REEGEVQVLP YVLVLHAFCL VDPGLCTPAS DPTKFVITLQ PYLKSQADSR TGAQLLESII FIIDSVLPLI RKLPLSVTED LEQDLKHMIV
1201: RHSFLTVVHA CVRCLCSVSK LAGKGVSIVE HLLQFFFKRL EAQGSDNTQI AGRSLFCLGL LIRHGNSLIS TSGGKNFNLS GCLNLFKRHL RTEDIALKVR
1301: SLQALGFILI ARPEYMLEED IGKIIETTLA DEANGRMKMQ ALQNMYEYLL DAEKQLGSEK ASDNTVNSVE QGGHNVPVAA GAGDTNICGG IVQLFWDKIL
1401: GRCLDFDDQI RQTSLKIVEV VLRQGLVHPI TCVPYLIALE TDPQEANQKL AHHLLMNMHE KYPAFFESRL GDGLQMSFIF MQSISQVTSE PNQSLQQKGS
1501: TNMLGKNDHA SSTLTQARLG VSRIYKLIRG NRVSRNKFMT SIVRKFDNPT WNGSVISFLK YCTETLALLP FTSPDEPLYL VYSINRVMQI RAGAVESNLK
1601: ALLHKDSAKT QHGNGAYQQD PIPGHMNMMD LNTRIQEEPR HWNSYGHATL IDLNGSVYQD SRDQFTSYQV HNGKADVHKM TSSDPPELST DDLQKIQVDC
1701: LAAIAIQLLL KLKRYLKVTY SLNDDRCQAY SPTEPLKPGD PLSRQSVAFD LSETRTDLPS TYQDLVQRYQ EFKNAMREDT VDFTIYSTNV KRKRPTPRKT
1801: SRSAKKTVAY NEDDDDDDND DRGWHGGGGR GAARRLNYST RSSNRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)