AT5G02880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ubiquitin-protein ligase 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ubiquitin-protein ligase 4 (UPL4); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: HEAT repeat ;HECT-domain (ubiquitin-transferase) (TAIR:AT4G38600.1); Has 5635 Blast hits to 5003 proteins in 272 species: Archae - 0; Bacteria - 11; Metazoa - 3196; Fungi - 992; Plants - 513; Viruses - 0; Other Eukaryotes - 923 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:662643..668847 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 167301.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.84 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1502 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MENRGQKRME VVEELPADKR ACNSQDFRPS TSGSSVQAQA NDTNPGHENV DADMDTSSSA SPSSRSDEEE QEEQDKEDSD YGSCDSDEED PRQRVLQDYQ 0101: RQRSSGDHGK LKSLLLNLTG ETDPSGQLSR LTELCEVLSF STEESLSSVM ANMLSPVLVK LAKHENNADI MLLAIRAITY LCDVYPPSVE FLVRHDTIPA 0201: LCQRLLTIEY LDVAEQCLQA LEKISRDEPV ACLNAGAIMA VLSFIDFFST SIQRVAISTV VNICKQLSSE SPSPFMDAVP ILCTLLQYED RQLVENVAIC 0301: LTKIADQASE SPAMLDQLCR HGLINESTHL LNLNSRTTLS QPVYNGVIGM LRKLSSGSAL AFRTLYELNI GYSLKEIMST YDISHSVSST HPINACSNQV 0401: HEVLKLVIEL LPASPVEDNQ LASEKESFLV NQPDLLQQFG RDMLPVMIQV LNSGANVYVS YGCLSAIHKL TCLSKSGDIV ELLKNTNMSS VLAGILSRKD 0501: HHVIVVALQV AEVLLEKYRD TFLNSFIKEG VFFAIEALLS SDRGQQNQGS ADLSQKPVTK EIVKCLCQSF ERSLSSSSQT CKIEKDSVYV LATRIKEGFF 0601: GPEVFNSEKG LTDVLQNLKN LSVALSELMT VPIDAHVLHD EKFFSIWNQI MERLNGRESV STFEFIESGV VKSLASYLSN GLYQRKLSKG GPECDSLPFI 0701: GKRFEVFTRL LWSDGEATSS LLIQKLQNSL SSLENFPIVL SQFLKQKNSF AAIPNGRCTS YPCLKVRFLK AEGETSLRDY SQDFVTVDPL CYLDAVDQYL 0801: WPKVNIEPID SVEAKDQAIE CQSSQLQSTS ISCQAESSSP MEIDSESSDA SQLQGSQVED QTQLPGQQNA SSSETSSEKE DAVPRLLFRL EGLELDRSLT 0901: VYQAILLHKL KSESEATNDS KLSGPHNITY ERSAQLGDSR ENLFPPGSME DDEYRPFLSY LFTHRLALRL KGSSHPPYDI LFLLKSLEGM NRFLFHLISL 1001: ERINAFGEGR LENLDDLRVQ VRPVPHSEFV SSKLTEKLEQ QLRDSFAVST CGLPPWFNDL MDSCPCLFSF EAKSKYFRLA AFGSQKIRHH PQHLSSSNVH 1101: GEARPVTGSL PRKKFLACRE NILESAAKMM ELYGNQKVVI EVEYSEEVGT GLGPTLEFYT LVSRAFQNPD LGMWRNDCSF IVGKPVEHSG VLASSSGLFP 1201: RPWSGTSTTS DVLQKFVLLG TVVAKALQDG RVLDLPLSKA FYKLILGQEL SSFDIHFVDP ELCKTLVELQ ALVRRKKLFA EAHGDSGAAK CDLSFHGTKI 1301: EDLCLEFALP GYTDYDLAPY SANDMVNLDN LEEYIKGIVN ATVCNGIQKQ VEAFRSGFNQ VFSIEHLRIF NEEELETMLC GECDLFSMNE VLDHIKFDHG 1401: YTSSSPPVEY LLQILHEFDR EQQRAFLQFV TGSPRLPHGG LASLSPKLTI VRKHGSDSSD TDLPSVMTCA NYLKLPPYSS KEKMKEKLIY AITEGQGSFH 1501: LS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)