AT5G02310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proteolysis 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:474279..482552 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 223976.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 2006 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: METNSSLFGL VSPSSHDLVI ERLASVGVPK KYRSKRGLVE FVRANPAKIS ELVSALLPTD DDVKLGLKEA RERPRKSAVS PTMKKRFRES MNMLQWLMFQ 0101: DEPDVSLRNL AKLNLDQRGV CGSVWGQNDI AYRCRTCEND PTCAICVPCF QNGDHNSHDY SIIYTGGGCC DCGDETAWKP DGFCSNHKGS EQIRPLSENL 0201: ANSVGPILDA LFTCWNNKLL SAESSGQKGA RSNDTLVILQ KMSNELTFIV VEMLLEFSMS SESLLSFVSR RIISSSGLLS ILLKAERFLD QDVMKKLHDL 0301: FLKLIGDPVF KCEFAKAFVS YYPVVISEVV KQGTDNAFKK YPLLSTFSVQ ILTVPTLTPF LVKEMNLLAM LLGCLSDIFV SCSGEDGLLQ ATKLERLCET 0401: SERVIGDLKF VMSHAIVSKY ATHEHRELSR SWLTLLTFAQ GMNPLKRETG IPIDEENDYM HLFFVLGHSI AVIHSLLVNG TYSAASDEEI ENDRNAKEEF 0501: DKCDGDGERY AKVGRLSHED SVCTAIVSSS SFDSSMASEV HKIDPFHALL PSSAIYLIRE CLKVLETCLG NDEGISKFLC KLSSSSGRNI PESKMSWPRR 0601: DLLNVETGGS VSSNLASSSR DPSTGLSPLC GDIQTNLSLD NVCGPYGVVQ TDVTADSKRV SCNSADLTKN ASGLRILGLC DWPDIHYDVS SQAISVHLPL 0701: HRLLSLLIQK ALRICYGESA SYNGVSISHE IPHADFFSSV IGDFHPCGFS ALVMEHVLQI RVFCAQVIAG MWKKNGDSAL VSCEWYRSVR WSEQGLELDL 0801: FLLQCCAALA PADSYVDKLL SRFGLSSYLS LNPDITNEYE PVLVQEMLGL LIQILQERRF CGLSTAESLR REIIFKLATG DFTHSQLVKS LPRDLSKSDE 0901: LQEVLDDVSV YCNPSGMNQG KYSLQSSCWK ELDLYHPRWQ SRDLQSAEER FSRYCGVSAL TTQLPRWRMI YPPLKGLARI GTCKATFQII SSALYYALQS 1001: GTSVKSRAPD GVLITALQLL SLSLDICTQQ RQSNSQDCCL ENSIPILELA GLEIIGIAQG TEKESLLSLL VSLMKTRMGD GRHQFPEPGS CNISSWIGNL 1101: LKKFSAIDSV CMNLLQSLAP EVVGQSGFDK VMSGSTSDEK RKAKAKERQA AIMAKMKAEQ SKFLSTLSSS MDDDDPRSEF ETSDSVMEHD SEIAVREVCS 1201: LCHDPDSKDP VSFLIFLQKS KLLSFVDRGP PSWDQCPQSE KKISVDGAPD LLRMNASSDS LRISSPLMLQ LSDDTISESA NMIESIKARL IGNGQTEKRS 1301: SDGRGKDESN MESLEIAMYQ TVRNKIENMI NQSLTRVDHQ PHEAENCSEK NSVGGPSTLQ GRFPDIRSRQ TSRRPDAGSD GFHPIDCDGV YLSSCGHAVH 1401: QSCLERYLKS LKERSGRRTV FEGAHIVDLK KKEFLCPVCR RLANSVLPEC PGDLCSVSKL QDSPRTKLRR KDALQPSLWL SEALCLLRSA AEVIEDGDRG 1501: KTVTPQGDGP RRKDLKSVSK MLWDFYFPKP EDKTLKRLWL PPQSIVMWDT LKYSLISMEI GTRFAKNSML PVYCIDSLYE ELKTSKGTIL SVLLRVVQSS 1601: RTKNTIHVRQ RFVGMKHLAE SICYGVSSSS SSSIFGSEGT TGSLKNIDLL WNRASDPVLA HDPFSSLMWA LFCLPFPFLT CEESLLSLVH IFHSVSLVQT 1701: VIAYCACRPS ELSELNFGEN LLNDISNALR ESGGWEYFRS NNMDLSCDIK DTIRKYSLPF LRRCALLWKL LKSTPRKLHE ESDMFDLPSD PTTDNMDFIY 1801: SPQSELNHVQ ELEKMFNIPP IDIILNDELL RSSTQIWLQH FQREYRVNRV KRSLCITPVV PFQLMKLPNL YQDLLQRCIK KRCVNCTKVI EEPVLCLLCG 1901: SLCSPIWSPC CRESGCPNHA ITCGAGTGVF LLIRRTTILL QRFARQSPWP SPYLDTFGEE DIDMIRGKRL YLNEERYAAL TYLVGSHGLD RSSKVLGQTT 2001: IGAVLH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)