AT4G17330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : G2484-1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
gene of unknown function expressed in seedlings, flower buds and stems | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
G2484-1 protein (G2484-1); FUNCTIONS IN: RNA binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Agenet (InterPro:IPR008395), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 6169 Blast hits to 4010 proteins in 631 species: Archae - 30; Bacteria - 1624; Metazoa - 1931; Fungi - 976; Plants - 400; Viruses - 26; Other Eukaryotes - 1182 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:9689263..9697172 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 218082.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.93 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||||||
| Length | 2037 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDYDDSDFQN QNLHLAGEAN NKFPPVLQPY ALPKFDFDDT LNTHLRFDSL GESEAFLGIE GNEDNNWIED FSRGSSGIVF SSGATESCAI SRHNNVWSEA 0101: TSSESVAMLL NSVGQDEVIV REDTIKKSDT SHELGCTMET VEPGQTSHER SLSKEETVNL QPNPSVDDTP GESSVVKTDD GQEQVLVKDD SPTAVEEASV 0201: EEKNSILTSN TATVEAIDTT DLGKIGTETT DNLLDQTEEK ANVESRMEDD CSDGNVQTII TCSGELNNQS TLLPETSNDE NVISDHIQSS YNRNDLTADA 0301: RSILVEGHSD SHIDSASEVE KVEAENIGKT AKPDLKEIEL SDVTVLERGD QAPSTLEVGG QDVSGTECQD LLVSTVHTSV AVEASLELAG ELTTITNSVS 0401: IEKPELLSHQ HMEVITSEHE STFQIETETY PQIHVFETSE SVYISTMDSM VEAREGGVSK KSDNEGSART SNLEQSMELP VNANDRDQDV KNSQILSESV 0501: VSGSVGYVSG GSTSELAESE SQSDSIPTDK SETMIDSSLN LEELQPLSQD GAPAVSLTSS IDLHMVKTSS DDSDQGSYSE TKKVYGEPEN GQTVPPVDAS 0601: CSGSQMDQEA RKRAEGTKQS TYSVEGCPRS EGSKDAVDAD GVGQVLQQQS EELIFEENVV TEAVKAPETL SVLDKDNKNE MPITSSLPIL GSEAGKDGQE 0701: EDNTAASGGI MAAGTPVTHP KGDAIVLGDS RASTCSESSV KSYVTAIEDA ATNLKTPLDS FPTVKTSELQ FNNTETNSVK KPEDQNISGF MSAGSPVLNR 0801: NETSSSEMNL TPDQLKAGKI SKAVIFSQAT LVSPIVVGSP STSSLDKTAA KSSKAKSERK PRRTSKSVGK ETSRKGTSVK GATPIEQFQS GGKTNAVNQS 0901: LASHIQITQS TEKQRSLQSP ALKAFGSLST PTASLPDLNS SALSSILRRP FTDLQQVQLR AQIFVYGALI QGTAPDEAYM ISAFGGADGG KGSWEKSWRT 1001: CVVRAQKSLV ATPETPLQSR PGKTETPSAG HTNSKESSGT NPMIPLSSPL WSLSTSVDTL QSSSVQRGSA ATHQPLLSAS HAHQTPPTQN IVGHNTPWMS 1101: PLPFRNAWLA SQQTSGFDVG SRFPVYPITD PVKLTPMKES SMTLSGAKHV QSGTSSNVSK VTPTLEPTST VVAPAQHSTR VKSRKRKKMP VSVESGPNIL 1201: NSLKQTELAA SPLVPFTPTP ANLGYNAGTL PSVVSMTAVP MDLVSTFPGK KIKSSFPSPI FGGNLVREVK QRSVLSEDTI EKLKEAKMHA EDASALATAA 1301: VSHSEYVWKQ IEQQSHAGLQ PETQDRLASA AVAIAAAAAV AKAAAAAANV AANAALQAKL MAEEASLPNA SDQGLPKSYD SILPGQGTPA SILKGEGAVV 1401: NSSSVLIAAR EASKKRVEAA TAATKRAENM DSIVKAAELA SEAVSQAGIL VSMGHPPLLN KLVEAGPSNY WRQAQESQEV QPCKTVVLEK ETVSTSEGTF 1501: AGPKIVQTEF GGSVNTADGV SGPVPATGKL KGQEGDKYAD LAKNNDVVFE PEVGSKFSID AQQTIKATKN EDIKEGSNVE VFKEEPGLRT AWYSANVLSL 1601: EDDKAYVLFS DLSVEQGTDK LKEWVALKGE GDQAPKIRPA RSVTALPYEG TRKRRRAALG DHIWKIGDRV DSWVHDSWLE GVITEKNKKD ENTVTVHFPA 1701: EEETLTIKAW NLRPSLVWKD GKWIECSSSG ETISSSHEGD TPKEKRPRLG TPALVAEVKD TSMKIVDDPD LGKPPQTGVL NLGVSENTFN IGKSTREENK 1801: PDPLRMKRTG LQKQGSKVIF GVPKPGKKRK FMDVSKHYVS EASTKTQERK EPVKPVRSIV PQNSGIGSWK MPSKTISIEK QTTISRPKTF KPAPKPKEKP 1901: GATARIIPRK DSRNTTASDM ESDESAENRG PGSGVSFKGT VEEQTTSSSH DTGSKNSSSL STNKGRVAPT AGRLAKIEED KALAENSSKT SEGMEPRRSI 2001: RRIQPTSRLL EGLQTSMMTS KIPSVSHSKS HLSQSKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)