AT5G16270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sister chromatid cohesion 1 protein 4 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a SCC1/REC8 ortholog that may be involved in mitosis and may represent a mitotic cohesin. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
sister chromatid cohesion 1 protein 4 (SYN4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion; LOCATED IN: nuclear chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rad21/Rec8 like protein, C-terminal (InterPro:IPR006909), Rad21/Rec8 like protein, N-terminal (InterPro:IPR006910); BEST Arabidopsis thaliana protein match is: Rad21/Rec8-like family protein (TAIR:AT3G59550.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:5316783..5322330 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114065.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 3.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1031 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFYSQFILAK KGPLGTIWIA AHLERKLRKN QVADTDIGVS VDSILFPEAP IALRLSSHLL LGVVRIYSRK VNYLFDDCSE ALLKVKQAFR SAAVDLPPEE 0101: STAPYHSITL PETFDLDDFE LPDNEIFQGN YVDHHVSTKE QITLQDTMDG VVYSTSQFGL DERFGDGDTS QAALDLDEAV FQDKDVIGSD DEGVPGIDHN 0201: AYLDAAAPGI KDSMEGVSEA MPMDFNEEQV EDLAMNNEFI EDAQAPQTPG LVEVPNSSSV REQMACDDHM DVEDLNAEEG IKSSGELNAN EMPKRGEDLS 0301: SEYNAPESAV TPVEVDKSQI DENVNTQNEP EEERAEHVHV TSPCCSHITT EMEDPGQVMN EAGANVVPDK PDAVPPLETP GEENRDHFAI ATEVNQETDS 0401: SLQGDEQAYS RPDGQLNNAH ETDEQLGNLT GFTDSDFPPP EKVLAVPNRQ GDGNDFMVES TPDKEDPGTC NDDAGNNNIT GKKRTFTEST LTAESLNSVE 0501: SVGLIQSKRT ADSVPDDDDL LSSILVGKSS FLKMRPTPVL EPATTKRLRS APRSTATKRK VLMDDPMVLH GDIIRQQLTN TEDIRRVRKK APCTVPEIVM 0601: LQRQALEDGL FKEPIFTGMS VELVSLHTEP YDLRGIMIIE NDDRHASVGA VEDNECSVTA VEENKTEESS DPQAHPNDCE EQPGTAHTHP QEEQTINQQE 0701: ELKDDNELAE KSDLEVLKEG NGAADEVNLV VIDDVSQIPS EEKLDRVEDL QVEESHENHD GEGGQDVCAD PNEKSCTDVI EIAEGDTDIN PIFNEMDLKV 0801: EDELPHEDEK TDASAEVSEL GRDDQTPCDN TVGSTETGCL EAGDLSNMAL ENCNEPLVEA NSDGLNPETE SYNKYEPHNE MSNEEASMQN ALDGEHTSRD 0901: GLMGDNDEMD TMENAHDTGF LNVDDDEVDE DHEEDDIQYD DETRLLENSG WSSRTRAVAK YLQTLFDKET ENGKNVLVAD KLLAGKTRKE ASRMFFETLV 1001: LKTRDYIQVE QGKPYESIII KPRPKLTKSI F |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)