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AT3G45190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.813
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SIT4 phosphatase-associated family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT1G07990.1); Has 1154 Blast hits to 1024 proteins in 229 species: Archae - 4; Bacteria - 93; Metazoa - 408; Fungi - 293; Plants - 121; Viruses - 2; Other Eukaryotes - 233 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRM1eggNOG:KOG2073EMBL:CP002686EnsemblPlants:AT3G45190
EnsemblPlants:AT3G45190.1entrez:823655Gene3D:1.25.10.10GeneID:823655
Gramene:AT3G45190.1hmmpanther:PTHR12634hmmpanther:PTHR12634:SF8InParanoid:F4J5I0
InterPro:IPR007587InterPro:IPR011989InterPro:IPR016024iPTMnet:F4J5I0
KEGG:ath:AT3G45190KO:K15501OMA:GDEQANNPANTHER:PTHR12634
PaxDb:F4J5I0Pfam:PF04499PRIDE:F4J5I0ProteinModelPortal:F4J5I0
Proteomes:UP000006548RefSeq:NP_190105.3STRING:3702.AT3G45190.1SUPFAM:SSF48371
TAIR:AT3G45190UniGene:At.1051UniProt:F4J5I0
Coordinates (TAIR10) chr3:-:16541994..16548161
Molecular Weight (calculated) 87644.30 Da
IEP (calculated) 4.17
GRAVY (calculated) -0.36
Length 789 amino acids
Sequence (TAIR10)
(BLAST)
001: MFWKLTALSA ASPVESILDK EDFTLEELLD EEDIIQECRA LNSRLINFLR ERAQVEQLLR FIVEESPEDA DSKRAFKFPF ISSEVLTCEI DVILKTLVDE
101: EELMNLLFSF LEPNRSHSVM LAGYFSKVVI CLMLRKTVPL MNYVKAHQNV FQQLVDLIGI TSIMEVLIRL VGADDHVYPN HLDVMQWLAD SNLLEMIVDK
201: LSPSNSLEVH ANAAETLCTI AQNAPSPLAT KLSSSSFVAR IFGHAFEDPQ SKSSLVHTLS VCISLLSPRR SVVSSPFMYS FRGQQIFESP ISVNPETIAT
301: MLPRLGDFVA LLNVTSDEKI LPTTYGQLRP PLGSHRLKIV EFIAVLLKTR SEATGKELAS SGAIRRVLDL FFEYPYNNAL HHQVESIILS CLESKNDEIV
401: DHLLRECDLI GKIIKTEKQP ILSGDKQPTL AAAGKQAPRV GNVGHISRIS NKLVQLSTNS NQIKTLLEEN NDWGEWEANT LHDRNAVENV YRWVCGRPTA
501: LHDRTRDSDD DEVHDRDYDL AGLANNLNQF RYNMQENNGA GEEHGSNDRD EEDVYFDDES AEVVISSLRL GDEQANNLFT NSNWFTFQGD ELGENTGTGA
601: ISSEEAMEDV SLNETSDGGD EEDEDEDCLI TESKNPFVDS TAATASTSEA VSVDADIEID EDVGTDELSP EWVERNDSSS AIAPGSTDDV KMPDVRIPNG
701: SSSSEGEISP RSPPVPSLFG KDVEFVGVEP EGTERAMDQA LKEGIVGEAG PMKRNTTTAS PGKESPDDSM QEYNDTNYWK VDQEVTVVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)