AT1G10390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleoporin autopeptidase | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleoporin autopeptidase; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, nuclear pore; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S59, nucleoporin (InterPro:IPR007230); BEST Arabidopsis thaliana protein match is: Nucleoporin autopeptidase (TAIR:AT1G59660.1); Has 77624 Blast hits to 32376 proteins in 1819 species: Archae - 124; Bacteria - 21147; Metazoa - 21029; Fungi - 13994; Plants - 4522; Viruses - 746; Other Eukaryotes - 16062 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:3407265..3412045 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106313.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1041 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFGSSNPFGQ SSGTSPFGSQ SLFGQTSNTS SNNPFAPATP FGTSAPFAAQ SGSSIFGSTS TGVFGAPQTS SPFASTPTFG ASSSPAFGNS TPAFGASPAS 0101: SPFGGSSGFG QKPLGFSTPQ SNPFGNSTQQ SQPAFGNTSF GSSTPFGATN TPAFGAPSTP SFGATSTPSF GASSTPAFGA TNTPAFGASN SPSFGATNTP 0201: AFGASPTPAF GSTGTTFGNT GFGSGGAFGA SNTPAFGASG TPAFGASGTP AFGASSTPAF GASSTPAFGA SSTPAFGGSS TPSFGASNTS SFSFGSSPAF 0301: GQSTSAFGSS AFGSTPSPFG GAQASTPTFG GSGFGQSTFG GQQGGSRAVP YAPTVEADTG TGTQPAGKLE SISAMPAYKE KNYEELRWED YQRGDKGGPL 0401: PAGQSPGNAG FGISPSQPNP FSPSPAFGQT SANPTNPFSS STSTNPFAPQ TPTIASSSFG TATSNFGSSP FGVTSSSNLF GSGSSTTTSV FGSSSAFGTT 0501: TPSPLFGSSS TPGFGSSSSI FGSAPGQGAT PAFGNSQPST LFNSTPSTGQ TGSAFGQTGS AFGQFGQSSA PAFGQNSIFN KPSTGFGNMF SSSSTLTTSS 0601: SSPFGQTMPA GVTPFQSAQP GQASNGFGFN NFGQNQAANT TGNAGGLGIF GQGNFGQSPA PLNSVVLQPV AVTNPFGTLP AMPQISINQG GNSPSIQYGI 0701: SSMPVVDKPA PVRISSLLTS RHLLHRRVRL PARKYRPGEN GPKVPFFTDD EESSSTPKAD ALFIPRENPR ALVIRPVQQW SSRDKSILPK EQRPTAPLHD 0801: NGKSPDMATD AANHDRNGNG ELGATGERIH TSVNANQKPN GTTRSDQASE KERPYKTLSG HRAGEAAIVY EHGADIEALM PKLRQSDYFT EPRIQELAAK 0901: ERADPGYCRR VRDFVVGRHG YGSIKFMGET DVRRLDLESL VQFNTREVIV YMDESKKPAV GQGLNKPAEV TLLNIKCIDK KTGKQFTEGE RVEKYKMMLK 1001: KKAEAQGAEF VSFDPVKGEW KFRVEHFSSY KLGDEDEEDG V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)