AT3G10650.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast hits to 31782 proteins in 2093 species: Archae - 202; Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants - 1653; Viruses - 629; Other Eukaryotes - 13509 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:3325562..3330819 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 135940.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.14 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1309 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASAARGESS NPYGGGLGTG GKFRKPTARR SQKTPYDRPT TSVRNAGLGG GDVRGGGWLS KLVDPAQRLI TYSAQRLFGS LSRKRLGSGE TPLQSPEQQK 0101: QLPERGVNQE TKVGHKEDVS NLSMKNGLIR MEDTNASVDP PKDGFTDLEK ILQGKTFTRS EVDRLTTLLR SKAADSSTMN EEQRNEVGMV VRHPPSHERD 0201: RTHPDNGSMN TLVSTPPGSL RTLDECIASP AQLAKAYMGS RPSEVTPSML GLRGQAGRED SVFLNRTPFP QKSPTMSLVT KPSGQRPLEN GFVTPRSRGR 0301: SAVYSMARTP YSRPQSSVKI GSLFQASPSK WEESLPSGSR QGFQSGLKRR SSVLDNDIGS VGPVRRIRQK SNLSSRSLAL PVSESPLSVR ANGGEKTTHT 0401: SKDSAEDIPG SSFNLVPTKS SEMASKILQQ LDKLVSTREK SPSKLSPSML RGPALKSLQN VEAPKFLGNL PEKKANSPDS SYQKQEISRE SVSREVLAQS 0501: EKTGDAVDGT SKTGSSKDQD MRGKGVYMPL TNSLEEHPPK KRSFRMSAHE DFLELDDDLG AASTPCEVAE KQNAFEVEKS HISMPIGEKP LTPSEAMPST 0601: SYISNGDASQ GTSNGSLETE RNKFVAFPIE AVQQSNMASE PTSKFIQGTE KSSISSGKPT SEEKRIPLEE PKKPAAVFPN ISFSPPATGL LNQNSGASAD 0701: IKLEKTSSTA FGVSEAWAKP TESKKTFSNS ASGAESSTSA APTLNGSIFS AGANAVTPPP SNGSLTSSPS FPPSISNIPS DNSVGDMPST VQSFAATHNS 0801: SSIFGKLPTS NDSNSQSTSA SPLSSTSPFK FGQPAAPFSA PAVSESSGQI SKETEVKNAT FGNTSTFKFG GMASADQSTG IVFGAKSAEN KSRPGFVFGS 0901: SSVVGGSTLN PSTAAASAPE SSGSLIFGVT SSSTPGTETS KISASSAATN TGNSVFGTSS FAFTSSGSSM VGGVSASTGS SVFGFNAVSS ASATSSQSQA 1001: SNLFGAGNAQ TGNTGSGTTT STQSIPFQFG SSPSAPSFGL SGNSSLASNS SPFGFSKSEP AVFTSVSTPQ LSSTNSSASS SSTMSSPLFG TSWQAPNSSP 1101: NSGPVFSSSF TTSSTPTTFS FGGSSAATVS STTTPIFGAS TNNTPSPSPI FGFGSTPPTT PQQPVFGNSG TPSQSLFGNS TPGFAFGAPN NGNGINNNQQ 1201: VSMEDSMAED TDQANRASMV APMFGQAAVS MPQPNFAFGG GAATQPPSMA NPFQFGGQPM ASTLQNASPF QASQSLEFQG GGSFSLGSTG GGDKSGRRIF 1301: KAKKSTRKK |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)