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AT5G42950.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24748391 (2014): plastid
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GYF domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GYF domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G24300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISNAeggNOG:ENOG4111GMCEMBL:AB008264EMBL:CP002688
EnsemblPlants:AT5G42950EnsemblPlants:AT5G42950.1entrez:834307Gene3D:3.30.1490.40
GeneID:834307GO:GO:0009737Gramene:AT5G42950.1hmmpanther:PTHR14445
hmmpanther:PTHR14445:SF43HOGENOM:HOG000090459IntAct:Q9FMM3InterPro:IPR003169
KEGG:ath:AT5G42950MINT:MINT-1365977OMA:ETGNSMNPfam:PF02213
Pfscan:PS50829PhylomeDB:Q9FMM3ProMEX:Q9FMM3PROSITE:PS50829
Proteomes:UP000006548RefSeq:NP_199109.1SMART:SM00444STRING:3702.AT5G42950.1
SUPFAM:SSF55277TAIR:AT5G42950UniGene:At.6528UniProt:Q9FMM3
Coordinates (TAIR10) chr5:+:17224436..17231044
Molecular Weight (calculated) 187629.00 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.86
Length 1714 amino acids
Sequence (TAIR10)
(BLAST)
0001: MANSSAGSAA DHRNKHLSVN PPHQIFKDIQ GSDNAIPLSP QWLLSKPGEN KTGMGTGDPN QYGNHSDVVR TTGNGEETLD NLKKKDVFRP SLLDAESGRR
0101: DRWRDEERDT LSSVRNDRWR NGDKDSGDNK KVDRWDNVAP KFGEQRRGPN DRWTDSGNKD AAPEQRRESK WNSRWGPDDK EAEIPRNKWD EPGKDGEIIR
0201: EKGPSLPTSD GDHYRPWRPS QGRGRGEALH NQSTPNKQVT SFSHSRGRGE NTAIFSAGRG RMSPGGSIFT SAPNQSHPPG SASDKGESGP GEPPHLRYSR
0301: MKLLDVYRMA DTECYEKFPD GFIEVPSLTS EEPTDPLALC APSSDEVNVL DAIEKGKIVS SGAPQTSKDG PTGRNPVEFS QPRRIRPAGS REDMTFGAEE
0401: SKDESGETRN YPDDKFRPEA SHEGYAPFRR GNEAPVRELK EPSMQGNAHV QSASPWRQSS GGERSNRNSH DWNDPSADSR LKSSDSVWSH PKDSINHLGG
0501: NNMMLPQSKG ESRWQISEDP SLRRQPSLVF DREQEVRKLL PSSPEELSLY YKDPQGLIQG PFSGSDIIGW FEAGYFGIDL LVRLASAPND SPFSLLGDVM
0601: PHLRAKSGPP PGFTGAKQNE FVDAAGTSAF PGVGKVHSGM GETDMLQNDM RYKHVAGTVA ENRFIESLMS GGLTNSAQGV QGYGVNSSGG LSLPVTDGGA
0701: DMYLLAKKLE LERQRSIPSP YSYWPGRESA NLMPGSENVS ENAQQPTRSP SSDLLSILQG VTDRSSPAVS GPLPAWSQPI QKESDLHHAK TFQTQIPFGV
0801: QQQRLPEQNL PLSGLLGQPM ENNPGGMLSP DMMLAAGLSQ EHQSLNLLQQ QQLLLQLNAQ TPLSAQHQRL LVEKMLLLKH QHKQEEQQQL LRQQQQLYSQ
0901: VFADQQRSQQ RFGDPSYGQL QASLDALRLQ PSKDMSQVNQ QVQVPVSHEE RGINLADLLP VTHATNQTVA SFETPSLHLQ NQLFGNVDPR MVLPDQIDDT
1001: HKKESKSEYE RTVSADYVNS LYSEKPVLSP GYHATHNVEE PVSYPNNESS TATMTAPEIV ESKLLEEQSK DMYAGKGEVS IELSGETPAT EVKNNDVSVA
1101: RKTSEKKSRK QRAKQAADLA KSTSRAPLQE TKKPQPGSAD DSEIKGKTKK SADTLIDNDT HLIKSSTATA SNTSQMSSEV DSVRGEESSL QNTRTQPGRA
1201: WKPAPGFKPK SLLEIQMEEQ RVAQAEALAP KISSTVNSVG SAAPWAGIVT NSDSNILRET HGESAITQTG VVKPESVPTL KAKKSHLHDL LADDVFAKSS
1301: DKEREVMEII SNNDAFMQVT TTNAESFDDD NFIDARETKK SRKKSARAKT SGAKIAAHVP AVDTSLQTNS VEKGKSSRIL QQQEKEVLPA IPSGPSLGDF
1401: VLWKGESVNN PPPAAAWSSG PKKSTKPSSL RDIVKEQEKM TTSSHPPPSP VPTTQKAIPP QAHQGGASWS RSASSPSQAV SQSSSQSKSK GDDDLFWGPV
1501: EQSTQDTKQG DFPHLTSQNS WGTKNTPGKV NAGTSLNRQK SVSMGSADRV LSSPVVTQAS HKGKKEAVTK LTEANGFRDW CKSECLRLLG SEDTSVLEFC
1601: LKLSRSEAET LLIENLGSRD PDHKFIDKFL NYKDLLPSEV VEIAFQSKGS GVGTRNNTGE DYYYNTTAAN DGFSKVGGKK KAKKGKKVSL SASVLGFNVV
1701: SNRIMMGEIQ TIED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)