AT5G58410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HEAT/U-box domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HEAT/U-box domain-containing protein; FUNCTIONS IN: binding, zinc ion binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23609663..23617343 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 208755.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1873 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGKPKGDAAR SKARPSSSSL AASLLPSGSA AAVGFGGYVG SSRFQTSLSN EDSASFLDLD SEVAQHLQRL SRKDPTTKIK ALASLSELVK QKQGKELLPI 0101: IPQWTFEYKK LILDYSRDVR RATHDVMTNV VTGAGRDIAP HLKSIMGPWW FSQFDLASEV SQAAKSSFQV GSSFGNSVFL VEAAFPAQEK RLHALNLCSA 0201: EIFAYLEENL KLTPQNLSDK SLASDELEEM YQQMISSSLV GLATLLDILL REPDNTGSAN INSESKLASK ARAVATSSAE KMFSSHKCFL NFLKSESPSI 0301: RSATYSLLSS FIKNVPEVFG EGDVRSLAPA LLGVFRENNP TCHSSMWEAV LLFSKKFPQS WVYLNVHKSV LNHLWQFLRN GCYGSPQVSY PALILFLEVM 0401: PAQSVESDKF FVNFFKNLLA GRSMCESSST DQLSLLRATT ECFLWGLRNA SRYCDVPNSI HDLQVDLIDK VLVKILWADF TELSKGSIPP NQRKSAENLG 0501: MGNSVSYLQE LGRCILEILS GINLLEQNLL SFFCKAVQES FLNMLQQGDL EIVAGSMRKM IDFLLLLERY SVLEGESWPL HQFMGPLLSK AFPWIRSSEL 0601: LDGVKLLSVS VSVFGPRKVV PVLIDDIETS TLLSVEKEKN MSPEKLIKVF QEIFIPWCMD GYDSSTAARQ DLLFSLLDDE CFTQQWSDVI SYVFNQQHQG 0701: FNNLAAMKML LEKARDEITK RSSGQELNQR IGSRPEHWHH TLIESTAISL VHSSSATTTS AVQFLCSVLG GSTQDSSISF VSRSSLVLIY RGILEKLLSF 0801: IKQSPLCSVN DTCSSLIVEA IAFDSSSSVD VIVVAKFAAE VIDGSFFSLK SLSQDATLLT TVLSSIFIID LENRMTSLVD NTLSESKEKR KDRNFVCDYV 0901: HAVCSKMDNQ FWKSINYDVR KSSASTLAQF LRSVVLLEDD LQPFELTLLC ASRMTEVLEY LSLDQSDEEN ICGLLLLESD AWPIWVSPSS SASIDTHGMP 1001: VQLCELRKSK SQRYVSFIDS LIMKLGIHRF IVGHKDHGFA SQAWLSVEIL CTWEWPGGKV QTSFLPNLVS FCKDEPSSGG LLNSIFDILL NGALVHVKDE 1101: EEGLGNMWVD FNNNIVDVVE PFLRALVSFL HILFKEDLWG EEEAMAAFKM ITDKLFIGEE TSKNCLRIIP YIMSIIISPL RTKVKSGGSG KDTLLPLEVL 1201: LRNWLERSLS FPPLVLWQSG EDIQDWFQLV ISCYPVSDKA EEAKELQRHL STEERTLLLD LFRKQKQDPG ASTVVTQLPA VQILLARLIM IAVSYCGNDF 1301: NEDDWDFVFS NLKRLIQSAV VVMEETSENV NDFISGVSSM EKEKENDTLE GLGHIVFISD PSINSAQNAL SAFSLLNALV NHKSVEGEDN LKSLADETWD 1401: PVKDRILEGV LRLFFCTGLT EAIAASYSPE AASIVASFRV DHLQFWELVA HLVVDSSPRA RDRAVRAVEF WGLSRGSISS LYAIMFSSNP IPSLQLAAYT 1501: VLSTEPISRL AIVADLNAPL NDESLNDQDS SNAGLPSEDK LLLRDEVSCM VEKLDHELLD TDLTAPERVQ TFLAWSLLLS NVNSLPSLTQ GRERLVQYIE 1601: KTANPLILDS LFQHIPLELY MGQSLKKKDG DIPSELSVVA SAATRAIITG SSLSTVESLW PIETGKMASL AGAIYGLMLR VLPAYVREWF SEMRDRSASS 1701: LIEAFTRTWC SPSLIKNELS QIKKADFNDE SFSVSISKAA NEVVATYTKD ETGMDLVIRL PVSYPLKPVD VNCAKSIGIS EAKQRKWLMS MQMFVRHQNG 1801: ALAEAIRIWK RNSDKEFEGV EDCPICYSVI HIGNHSLPRR ACVTCKYKFH KACLDKWFYT SNKKLCPLCQ SPC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)