AT3G27670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RESURRECTION1 (RST1); FUNCTIONS IN: binding; INVOLVED IN: cuticle hydrocarbon biosynthetic process, embryo development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 92 Blast hits to 88 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 50; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:10245338..10253158 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 203759.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.09 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1841 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASYATLLEK TRVPQPSIQR FAVISVFSKL RSAPEQFGSE AEAGREAISF CLTSESITVV DQSVHELCRL VSDSVLDLSR GLLELQSALE GCDSKLVSLF 0101: VKGLGFLIRI GYERNNGNWK FNSTENHPFV RIQSSRVETQ TELLHQVSLF VMHNRRLGMV GVCEFLEPFL NFTILRIPLS DSSSSLFARE LISSMASLCC 0201: SSRHEALPIF RLLMRCLKYI PGNNLEVIVK ILVDAYTVVV RDLVGTGLEV TEVHLLGVQL VDGVLFLCAS PHVQTTEQES VIESLKHLLA VQKDLGLAYS 0301: HDLSLVVLSL VFMLAKSTVE HEQLCILKFL LFLLKWKTES ENLSVKDAAG SSVESLLLFP ITALMSSPSK SIKVAASKVL SIVENFLVTV SNAPKIEVHT 0401: SKGDSPLSRV GSVVFRFMQQ LWHQNDYTPS TSSFLRVAYT NGSEKQETYL GPVTWNSLLR EHAERFWDKK KLSASFCLSQ EIPILLGAVA GVMVMHPSLG 0501: ADAIGSLTII GGIDSKMSVP LLLAVLYFSN LLSRTNVPCQ SLLSKLLGLL PSLAAQQVMI PLVVQTITPM LRKDAKGLLY ATAIRLLCQT WVVNDRAFSS 0601: LQEVLRPQGF IEYISERHIC ISMAASIHDV CKRHPDRGVD LILSVQACIE SQNCPVRALG FQSLSHLCEA DVIDFYTAWD VIKKHAQHIK LDPLLAYSVC 0701: HLLKWGAMDA EAYPEDAENV LNILWEIGSS MQKPHDSQWT KARVSAIVAL GQYEVSFMEN KFSDFNKNCT YLLFSETNAE ILNALEDLSI KIMIHEHSVR 0801: RRYVREKKVP GSKIEKLLDV IPQVIFPAGK EIKTGELPGA ALLCLSYNPR DVKFGSSRSF HDVHFQYEEA FRVVVKSLQL SRNISLALIS LQSLKAFMRR 0901: WMRANILSID ATTKELSSDK TSKATNNIMK SLVHMAEEAL PRCAENIALA LGALCAALPA ASHNIKASAS KFLLSWLLEH EHEHRQWTAG ISLGLISSSL 1001: HVTDHKQKFQ NISGLLEVLC SSKSTLVKGA CGVGLGFSCQ DLLTRTEASA SSDIDSDSYR NQEERLLGRI VRLLSSILHG FLHTPCDILE SLSALFPPGE 1101: EDNVIGLPQL LDESSDDFDD DTWGIAGLII GLGMSVGAIY RAGKKDAVVK IKNLIVSWIP YADSLKQTSG SNSKVSVRLF SVGSCLALPI VITFCQKVEL 1201: FDAHEVDDII GCFKDLISEL LIVRKSGALR KRLLMASCIG AGDLLGSVLN EGIHPVKIES VKELLELFKK CYSGLYPPVA HFGGMLGVVN VLGAGAGNLV 1301: YSHPRPRAPP ASSEENEISY VSGPLLSNAY FTQQLTPVVQ EIFLIAQNTK DRQLQHYAAW AISILRTYMR SGESSSLSNE NQSDDSDRNS ISHNVPEHTM 1401: VMKLAQGLTN PSFPLAGSPL NIGTMASALR CLSHAPRLPN LDWGATIRRL MKQETQTDVT QSGDVPKEIT LREECFKFSL AHASEFDELL AFLDELSELS 1501: RFKALEESLQ SCLLCHLGGL MRIFSGSRMN KLFDDVSCFV VSLSSDQTYS CDQKSSLRVS CWKGLSQCLE ETSLESSEYV TKIEKCIELL FAVLPVASQS 1601: PRADQMGSVK EWSEAVTCLQ KSHRDWLYKF LQVSNLEPGN EKTNFQGDLK KIQAKAKLAK LGSVPFSELG KLKAIILNCE ESDIWDVLIE IVAALHHAEG 1701: GIKRQWLIDA VEISCVSSHP STAIIFVGLL SSICCEYMPF LNLDRSTVLS DMSVTVTSLL SDPSYEVVTE PFISFLWTSL ERVYSFATES DANARLSSQQ 1801: IAQSERDKAP MLVKVMHYIC VAFRDHLPLE KQLRLASMDM S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)