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AT4G11270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISJ1eggNOG:ENOG410Y2AEEMBL:AL096882EMBL:AL161531
EMBL:CP002687EnsemblPlants:AT4G11270EnsemblPlants:AT4G11270.1entrez:826729
Gene3D:2.130.10.10GeneID:826729GO:GO:0005829Gramene:AT4G11270.1
hmmpanther:PTHR22844hmmpanther:PTHR22844:SF185HOGENOM:HOG000153543InterPro:IPR001680
InterPro:IPR015943InterPro:IPR016024InterPro:IPR017986InterPro:IPR019775
KEGG:ath:AT4G11270ncoils:CoilOMA:CAAPRSIPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9SUT4PIR:T13018
PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548
RefSeq:NP_192866.1scanprosite:PS00678SMART:SM00320SMR:Q9SUT4
STRING:3702.AT4G11270.1SUPFAM:SSF48371SUPFAM:SSF50978TAIR:AT4G11270
UniGene:At.33577UniProt:Q9SUT4
Coordinates (TAIR10) chr4:+:6854461..6859490
Molecular Weight (calculated) 159385.00 Da
IEP (calculated) 6.06
GRAVY (calculated) -0.02
Length 1446 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKCRSVACLW SRAPPSHRVT ATASLTNPPT LYTGGSDGSI IWWSISSSSE SNSVTRLPHH EIKPIAMLCG HTSPIVDLAI CDPTILSSNG VVASDNGNAD
0101: PFVNCCALIS ACTDGVLCVW SRSSGQCRKR RKLPPWVGSP SILSTLPSEP RYVCVGCSYI DVDGAETLAD TDFQKSRCTV VVVDTYTLTI VHTVFHGNLS
0201: IGCLNFMGVV QLDEQESLLM ADSFGRLQLV SVSEKSEPSK GSLVSRNWLS EGEIAVSVIT RGDLVAFFSK SRCVFWLLNR EEAIGEISFV DDSHSSNFLF
0301: KEAMILYSST STIEGDKDDS ISETFVLWDG SGSAVLFTMS YIDGEFTYKN FGEIVTAPDD KRSVKSTFCF VQLRQNLLRV ESSCCDVEQP SQWRPHITIW
0401: SLCLGNGKEK ELQRKVLGES SYFADWISSS CLDPKGSVSA ETGTSQSGSQ CSAKNDLQSF VSDNGQCVSS SMVISENMYV PYAVVYGFFS GEIEIAKFDF
0501: LHGIDSPASS PRSDTDPLVY KQRLLGHTGS VLCLAAHRMF GDANGCNSSH VLISGSMDCT IRIWDLESGN VIMIMHHHVA PVRQIILSPA PTKRPWSKCF
0601: LSVGDDSCVA LSSLETLRVE RMFPGHPNYP TKVVWDGTRG YIACLFRSLS RKSDPIDVLY IWDVKTGARE RVLHGAASHS MFDHFCAGIS EKSHSGTVLN
0701: GNTSVSSLLF PVDEERKPFY LKNYERAASL STSKPSSSQE KTREESSTAS SFLQSIRYPS IKCTCPFPGI STLIFDLSSL AVYCQTHEDS DMHKMLEEKS
0801: DKATAQQKTS KDKSPVQKTL DNHAEVVHMD KAIGEYLIRF SLSFLHLWGI DFELDQMLVA HLKLKRPESF IVTSGLQGDK GSLTLAFPGL NATLELWKSS
0901: SEFTALRSVI MVSLAQCMIS LSHSTATYSS NLAAFYTRNL AEKYPDLKPP LLQLLVTFWQ DNSEQVRMAA RSLFHHTASL AIPLPLCSDH ASEHAELVRS
1001: LSGISLNEPK VLSTGEEYPT NSLDSEHIHQ AQRLSQAEES EILSWLESFE MQDWISCVGG TSQDAMAAHI IVAAALSIWY PSLVKPGLAM LVVHKLLNLV
1101: MAMSEKYSST AAELLSEGME TTWKTWIGPD IPRIVSDIFF QIECVSSSVG AYQVVPSSIK ETLVEVLLPS LAMADVLGFL SIIESQIWST ASDSPVHVVS
1201: LRTLIRIIRA APRNLVLHLE KAVNFVLQTM DPSNTVMRKT CLQTSMATLR EVVRVFPMVI LNDSSTRLAI GDVITEINNA CIHIYDMRSM TKIRVLDASG
1301: PPGLPNFLRG ASESAVTTAI SALSFSPDGE GLVAFSENGL MIRWWSLGSV WWEKLSQSLT PIQCTKLIFI HPWDGFSSSS SRTSVISSIS NDEQELPLQE
1401: TAKNISHVER LKQLVQHLDL SYRLEWASER KVVLTRHNVE LGTCLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)