AT1G12470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 495 Blast hits to 471 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 162; Plants - 42; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4251359..4257201 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 112326.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||
| Length | 988 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDQGRQVFSV DLLERYATKN RGMITCMAAG NDVIVLGTSK GWIIRYDFGV GSSNDIDLAV GRTGEQSIHK VFVDPGGSHC IATVTGVGGA ETFYTHAKWL 101: KPRVLSRLKG LLVNAVAWNR QQITEVSTKE IILGTQDGQL FEMAVDEKDK REKYIKFLFE LEELPEAFKA LQMETANISS GMRYYVMAVT PTRLYSFTGI 201: GTLESVFASY KERAVHFMEL PGEIPNSELH FFIKQRRAVH FAWLSGTGIY HGGLNFGAQH SYPNGDENFV ENKALLDYSK LSDGTEAVKP GSMALSEYHF 301: LLLIGNKVKV VNRISEQIIE ELQFDITSDS VSRGIIGLCS DASANVFYAY DQNSIFQVSV IDEGRDMWKV YLDLKVYAAA LANCRDPLQR DQVYLVQAES 401: AFTDKEYLRA ASFYAKINYV ISFEEVTLKF ISINEPEALR TFLLHKLDNL SKDDKCQITM ISTWATELYL DKINRLLLED DTAIENRDSE YHSVIQEFRA 501: FMSDCKDELD EATTVKILES YGRVEELVYF ANLKEQYEIV VLHYIQQGEA KKALEVLQKS SVSVELQYQF APELIMLDAY ETVESWMANK NLNPRRLITA 601: MMRYSSGPHA KNETHEVIKY LEFCVHRLHN EDPGIHSLLL SLYAKQEDDG ALLRFLQCKF GKGRENGPEF FYDPKYALRL CLKERRTRAC VHIYSMMSMH 701: EEAVALALQI DPELAMAEAD KVEDDEDLRK KLWLMVAKHV VKQEKGAKRE NIRKAIAFLK ETDGLLKIED ILPFFPDFAL IDDFKEAICS SLEDYNKQIE 801: QLKEEMNDAT RGADNIRNDI SALTQRYAVI DRDEECGVCK RKILMMSGDF RMAQGYSSAG PLAPFYVFPC GHSFHAQCLI THVTSCAHEE QAEHILDLQK 901: QLTLLGSETR RDINGNRSDE PITSTTTADK LRSELDDAIA SECPFCGELM INEITLPFIK PEDSQYSTSW DLRSETNLAN QRTISLPV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)