AT5G16280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:5323377..5331345 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 143588.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.63 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||
| Length | 1272 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVEPVNSSLG KMLLEEISPV VMVLCTPLVE DTFLRNGLSF VETLKPFCNF SNIDVPVRTS SDQLYRLKKF TLRLFYASDI KQPNVEVAKQ RLERVITQAG 0101: EKDFQDLKSD PPQITDILSN PESEIAPSWF RYYNKELIRT LSFSDHEAFD HPVACLLVVS SKDEEPIKKF VDLFNSNRLP TDGTMDPNIL KHYLLVHDNQ 0201: DATTERTSKV LSEMRSQFGN NECNLLCTNS SKEGNVEHQA NPWASFKSSV SADKLGCALT GDDIVEIKDL MQEFASRHII PYMEQKVREL NQQISATRKG 0301: LKNQFKNFLW RKGKDDNPDA TKGSMYTYSS TESQIRILGD YAFMLHDYEL ALSSYRLIYT DYNIDKAWKH YAGVQEMRGL AYFISDQPKK DSECMENAFS 0401: TYMKLGKSGF QNATRCGLWW AEMLKARDQH KEAASVYFRI CGEEPLHAAV MLEQASYCFM LTKPAMLHKY GFHLVLSGDH YKNCNQVNHA IRTYKSAISV 0501: YKSTTWSHIK DHLYFHIGQW YAIVGMHDVA VRNMLKVLDC GYQSKATQEI FLRDFFDIVK KTGMKHEVVG LQLPILNMSS LQVIYEDHRT YASQASALVE 0601: ESIWQSLEDD IIPSLNSGKS NWLELQSKLL PKKYKESNVC VAGESVKLDL EFRNPLLIST SITSVSLICE LTANSDDLKL VDNEPSGSSL SPEISTEHNQ 0701: VTTSGFSSFT LSEVDFTLGG GEKKLVRLTV TPSEEGILKI VGVRWELSGS IVGVHYFQSV SVKAKTARGR RKNKLTPTDA LKFLVIKSLP RLEGSIDHLP 0801: EKLYAGDLRY LVLELRNKSE SPTKNLKMKI SHPRFVSPGN HEEELTTEFP DCLKKGDEHN IVQRESNRTS SVFAFPKDVS LQGDRSLRWP LWLRAAIPGT 0901: ISLYFTIYYE MENVSSMKYR TLRMHYNLQV LPSLQTSFKV TPSPSRLQEF LVRMDIVNRA KSDCFQIHQL STVGCRWGIS LLQPVDTILP SKFLLAGQAL 1001: SCFFMIKDCR KSGTEDEETT SLPPSQTDVK LYTQDDDEKL FDIVSSPLAS FHESERSCQG PSVQVSPNTV DFILISRLAK SSSPSAVPDL PKILSHHSCH 1101: NSIRSSSPIS WSLDGPQTIH HDFSTSLCEI KLKMVIRNTS DGISSVTINT NDFLPDAAAT TSSSGNQSGW RYVPTITEEM KLTSDVMGSR LGKPPSSMES 1201: SPPFIWSGLS STKIQIQPLS TTEIPLQISV FSPGIYDLSS YELNWELSEH ESATSSGTCQ GYPYYLTVLQ SE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)